Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Reverse (-)

4743010 .. 4748044

Gene Structure 5035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG063000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCACTTTTCTTGTCGTCGACGTTTGATCAGGCTTATCATCAGCTCGCAGAAATCGAAGCGGAACTGAAAGCAGCAATGGCTGGATCGAAGAAAGTGATAACGAGGGAAGAGTGGGAGAAGAAGCTTAATGATGTGAAGATCAAGAAGGAGGACATGAATAAACTGGTTATGAATTTCCTTGTGACTGAGGGTTATGTGGATGCCGCGGAGAAATTCCGAAAGGAATCTGGAACCGAACCAGATATTGATCTTGCAACAATCACTGACCGCATGGCGGTCAAGAAGGCGGTACAATGTGGTAATGTGGAGGATGCAATTGAGAAGGTGAACGACTTAAACCCGGAGATTCTGGACACAAATCCCCAGTTATTTTTCCATCTCCAACAGCAAAGGTTGATAGAGCTAATTAGGAATGGAAAGGTAGAAGAGGCTCTTGAGTTTGCTCAGGAAGAGCTAGCACCAAGAGGAGAAGAAAATCAAAGCTTTTTAGAAGAGTTGGAGAGGACTGTTGCACTTCTAGCTTTTGAAGATGTGTCCAACTGTCCTGTAGGAGAGCTTTTGGACATATCACAGCGCCTAAAGACAGCTAGTGAAGTGAATGCCGCCATCCTCACTAGCCAGAGTCATGAAAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

213

Amino Acids

24.03

Weight (kDa)

4.68

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	51 - 77	2.5e-09	LisH
CTLH	PF10607	88 - 210	5e-32	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	1 cut(s)	209
AciI	CCGC	7 cut(s)	62, 207, 209, 271, 278, 290, 606
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	175, 215
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	530
AluBI	AGCT	8 cut(s)	46, 127, 406, 457, 486, 524, 559, 590
AluI	AGCT	8 cut(s)	46, 127, 406, 457, 486, 524, 559, 590
AlwI	GGATC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	175, 215
AspLEI	GCGC	1 cut(s)	579
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	340
AsuNHI	GCTAGC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	387, 617
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	4 cut(s)	458, 521, 591, 618
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	580
BisI	GCNGC	3 cut(s)	75, 207, 606
BlsI	GCNGC	3 cut(s)	76, 208, 607
Bme1390I	CCNGG	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	193, 304
BmtI	GCTAGC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	361
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	171, 367
Bse3DI	GCAATG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	3 cut(s)	208, 319, 609
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	180, 461
BseNI	ACTGG	2 cut(s)	171, 367
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	607
Bsp143I	GATC	4 cut(s)	28, 86, 141, 250
BspACI	CCGC	7 cut(s)	62, 207, 209, 271, 278, 290, 606
BspCNI	CTCAG	2 cut(s)	181, 460
BspFNI	CGCG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	1 cut(s)	235
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	171, 367
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	4 cut(s)	28, 86, 141, 250
Bst4CI	ACNGT	2 cut(s)	511, 545
Bst6I	CTCTTC	4 cut(s)	105, 423, 447, 489
BstC8I	GCNNGC	2 cut(s)	48, 459
BstDEI	CTNAG	2 cut(s)	189, 447
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	3 cut(s)	208, 319, 609
BstFNI	CGCG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	4 cut(s)	31, 89, 144, 253
BstMBI	GATC	4 cut(s)	28, 86, 141, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 521
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	208, 319, 609
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	48, 459
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	1 cut(s)	579
Cfr42I	CCGCGG	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	157, 274, 629
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	189, 447
DpnI	GATC	4 cut(s)	30, 88, 143, 252
DpnII	GATC	4 cut(s)	28, 86, 141, 250
Eam1104I	CTCTTC	4 cut(s)	105, 423, 447, 489
EarI	CTCTTC	4 cut(s)	105, 423, 447, 489
FaeI	CATG	3 cut(s)	160, 277, 632
FaiI	YATR	6 cut(s)	158, 173, 198, 275, 569, 630
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	3 cut(s)	156, 273, 628
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	75, 207, 606
FokI	GGATG	3 cut(s)	215, 326, 596
Fsp4HI	GCNGC	3 cut(s)	75, 207, 606
FspBI	CTAG	4 cut(s)	458, 521, 591, 618
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	3 cut(s)	75, 207, 606
HaeII	RGCGCY	1 cut(s)	580
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	3 cut(s)	160, 277, 632
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	2 cut(s)	125, 484
HinfI	GANTC	3 cut(s)	227, 349, 625
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	2 cut(s)	21, 331
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	7 cut(s)	145, 231, 283, 353, 437, 449, 629
Hpy8I	GTNNAC	2 cut(s)	21, 331
Hpy99I	CGWCG	2 cut(s)	22, 25
HpyAV	CCTTC	3 cut(s)	142, 280, 319
HpyCH4III	ACNGT	2 cut(s)	511, 545
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	257, 317, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 521
HpyF3I	CTNAG	2 cut(s)	189, 447
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	160, 277, 632
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	28, 86, 141, 250
LguI	GCTCTTC	1 cut(s)	447
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	2 cut(s)	193, 304
MaeI	CTAG	4 cut(s)	458, 521, 591, 618
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	3, 184
MalI	GATC	4 cut(s)	30, 88, 143, 252
MboI	GATC	4 cut(s)	28, 86, 141, 250
MboII	GAAGA	9 cut(s)	103, 122, 133, 151, 440, 464, 485, 506, 542
MfeI	CAATTG	1 cut(s)	318
MluCI	AATT	4 cut(s)	175, 215, 318, 408
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	3 cut(s)	409, 480, 564
MnlI	CCTC	8 cut(s)	99, 145, 184, 304, 424, 461, 498, 623
MseI	TTAA	2 cut(s)	129, 338
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	607
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	80, 521
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	4 cut(s)	28, 86, 141, 250
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	160, 277, 632
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	3, 184
PagI	TCATGA	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	227, 349
PkrI	GCNGC	3 cut(s)	76, 208, 607
PleI	GAGTC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	633
PspN4I	GGNNCC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SacII	CCGCGG	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	129, 338
SatI	GCNGC	3 cut(s)	75, 207, 606
Sau3AI	GATC	4 cut(s)	28, 86, 141, 250
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	1 cut(s)	344
SfaNI	GCATC	2 cut(s)	193, 304
SfcI	CTRYAG	1 cut(s)	549
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SgrDI	CGTCGACG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	175, 215, 318, 408
SsiI	CCGC	7 cut(s)	62, 207, 209, 271, 278, 290, 606
SspMI	CTAG	4 cut(s)	458, 521, 591, 618
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	511, 545
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	20, 57, 89
TasI	AATT	4 cut(s)	175, 215, 318, 408
TauI	GCSGC	2 cut(s)	209, 608
TfiI	GAWTC	2 cut(s)	227, 349
Tru1I	TTAA	2 cut(s)	129, 338
Tru9I	TTAA	2 cut(s)	129, 338
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	3, 184
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	3, 184
TspDTI	ATGAA	2 cut(s)	173, 188
TspRI	CASTG	1 cut(s)	271
XapI	RAATTY	2 cut(s)	175, 215
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	4 cut(s)	458, 521, 591, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.