Rorug04G0427300

Glucose-induced degradation protein 8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003571
Physical Location & Seq
Forward (+)
58572481 .. 58573742
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0427300.1

Sequence Viewer

Length: 669 bp
ATGAAAGCCTCTAATAAGAGAAACACTGAGAATGAGAGACACCATGGAGTCGAACGTCTTCAGGCATCCAAAACTGAAAAGAATGACATGGTGGTACCACAATGGTTGAAAATTGTGTACAGCACAGTATTCTTCGAGACTTGCATTGCACACTCGGATGCAAAAAAGAACGGTATAGATCATTTCTGCATTGATTGTCTTCAACCGATATGTCTGAACTGTCTTGCCCACCATATGTTTCACAAGCACATTAAGATTCGGAGATATATTTACAGTGATGTGATTAATCGTCAAGACTTATGCAAGCTCTTCAACTGTTCTGGCATACAGACATATCATACAAACAAAGCCAAAGTGGTATTCTTGAAGCAAAGGCATCAACCACAACAGCAAGAGCAACAGCGACAGCGACAACATTATAATAAATCGAGGGAGTATATGTGTACCACCTGCCACAAGAATTTGCAAGACAATTCCCTCTATTGCAGTGTTGCCTGCAAGGTTTCAGCAATACTTGGAAACGAATGCCAGAGAAAAACTATATGTGGTGGTCATAGTTTTGAAGATCATAATGAGAAAAAGGGAGGGAAAAAAAATCTAGAAGTACCATTTTCCAAAAGGCCAAAGTTAAGGAGAAAAGGAGTCCCTCTAAGATCCCCAATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH LisH

Protein Analysis

222

Amino Acids

26.04

Weight (kDa)

9.59

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 87 - 168 3.9e-24 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AarI CACCTGC 1 cut(s) 458
Acc36I ACCTGC 1 cut(s) 458
Acc65I GGTACC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 94
AclWI GGATC 1 cut(s) 648
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 4 cut(s) 96, 119, 445, 606
AgsI TTSAA 5 cut(s) 109, 203, 313, 367, 563
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 2 cut(s) 31, 131
AlwI GGATC 1 cut(s) 648
AoxI GGCC 1 cut(s) 620
ApoI RAATTY 1 cut(s) 460
AseI ATTAAT 1 cut(s) 285
Asp700I GAANNNNTTC 1 cut(s) 57
Asp718I GGTACC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 94
BbsI GAAGAC 2 cut(s) 50, 191
BcoDI GTCTC 2 cut(s) 31, 131
BfaI CTAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 458
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 3 cut(s) 74, 148, 385
BpiI GAAGAC 2 cut(s) 50, 191
BsaJI CCNNGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bse3DI GCAATG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 65, 163
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 18
BshFI GGCC 1 cut(s) 622
BshNI GGYRCC 1 cut(s) 94
BslFI GGGAC 1 cut(s) 629
BsmAI GTCTC 2 cut(s) 31, 131
BsmFI GGGAC 1 cut(s) 629
BsmI GAATGC 1 cut(s) 530
BsnI GGCC 1 cut(s) 622
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 3 cut(s) 178, 565, 653
Bsp19I CCATGG 1 cut(s) 43
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 648
BspQI GCTCTTC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 178, 565, 653
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 5 cut(s) 127, 173, 221, 275, 317
Bst6I CTCTTC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 305, 496
BstDEI CTNAG 2 cut(s) 27, 650
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 65, 163
BstKTI GATC 3 cut(s) 181, 568, 656
BstMAI GTCTC 2 cut(s) 31, 131
BstMBI GATC 3 cut(s) 178, 565, 653
BstV2I GAAGAC 2 cut(s) 50, 191
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
BsuRI GGCC 1 cut(s) 622
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 65, 163
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 3 cut(s) 24, 280, 493
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 305, 496
Csp6I GTAC 4 cut(s) 95, 118, 444, 605
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviAII CATG 2 cut(s) 44, 88
CviJI RGCY 4 cut(s) 8, 307, 350, 622
CviKI_1 RGCY 4 cut(s) 8, 307, 350, 622
CviQI GTAC 4 cut(s) 95, 118, 444, 605
DdeI CTNAG 2 cut(s) 27, 650
DpnI GATC 3 cut(s) 180, 567, 655
DpnII GATC 3 cut(s) 178, 565, 653
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 47, 91
FaqI GGGAC 1 cut(s) 629
FatI CATG 2 cut(s) 43, 87
FauNDI CATATG 1 cut(s) 234
FokI GGATG 2 cut(s) 52, 170
FspBI CTAG 1 cut(s) 599
HaeIII GGCC 1 cut(s) 622
Hin1II CATG 2 cut(s) 47, 91
HinfI GANTC 3 cut(s) 48, 256, 642
Hpy166II GTNNAC 2 cut(s) 118, 444
Hpy188I TCNGA 4 cut(s) 157, 216, 261, 668
Hpy188III TCNNGA 4 cut(s) 136, 293, 364, 599
Hpy8I GTNNAC 2 cut(s) 118, 444
HpyCH4III ACNGT 5 cut(s) 127, 173, 221, 275, 317
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 8 cut(s) 144, 149, 161, 189, 303, 466, 486, 498
HpyF3I CTNAG 2 cut(s) 27, 650
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 2 cut(s) 47, 91
KpnI GGTACC 1 cut(s) 98
Kzo9I GATC 3 cut(s) 178, 565, 653
LguI GCTCTTC 1 cut(s) 314
LpnPI CCDG 5 cut(s) 47, 306, 463, 508, 542
LweI GCATC 3 cut(s) 74, 148, 385
MaeI CTAG 1 cut(s) 599
MaeII ACGT 1 cut(s) 55
MalI GATC 3 cut(s) 180, 567, 655
MboI GATC 3 cut(s) 178, 565, 653
MboII GAAGA 5 cut(s) 50, 124, 191, 301, 575
MflI RGATCY 1 cut(s) 653
MluCI AATT 3 cut(s) 111, 460, 472
MlyI GAGTC 2 cut(s) 57, 651
MnlI CCTC 5 cut(s) 19, 423, 488, 578, 657
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 3 cut(s) 252, 285, 629
MslI CAYNNNNRTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 530
NcoI CCATGG 1 cut(s) 43
NdeI CATATG 1 cut(s) 234
NdeII GATC 3 cut(s) 178, 565, 653
NlaIII CATG 2 cut(s) 47, 91
NlaIV GGNNCC 1 cut(s) 96
PaqCI CACCTGC 1 cut(s) 458
PciSI GCTCTTC 1 cut(s) 314
PctI GAATGC 1 cut(s) 530
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 256
PleI GAGTC 2 cut(s) 56, 650
PpsI GAGTC 2 cut(s) 56, 650
PshBI ATTAAT 1 cut(s) 285
PsiI TTATAA 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 653
RsaI GTAC 4 cut(s) 96, 119, 445, 606
RsaNI GTAC 4 cut(s) 95, 118, 444, 605
RseI CAYNNNNRTG 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 3 cut(s) 252, 285, 629
Sau3AI GATC 3 cut(s) 178, 565, 653
SchI GAGTC 2 cut(s) 57, 651
SetI ASST 4 cut(s) 58, 309, 452, 504
SfaNI GCATC 3 cut(s) 74, 148, 385
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 3 cut(s) 111, 460, 472
SspMI CTAG 1 cut(s) 599
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 5 cut(s) 127, 173, 221, 275, 317
TaiI ACGT 1 cut(s) 58
TaqI TCGA 3 cut(s) 51, 135, 428
TasI AATT 3 cut(s) 111, 460, 472
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 3 cut(s) 252, 285, 629
Tru9I TTAA 3 cut(s) 252, 285, 629
TscAI CASTG 3 cut(s) 31, 280, 493
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 31, 280, 493
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 1 cut(s) 460
XbaI TCTAGA 1 cut(s) 598
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.