Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Reverse (-)

1900002 .. 1904064

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G040500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCACTGTTCTGGATTGTGGTTCATCAACTTGCAGAGATCGAAGCAATGGCTGCGTCGAAGAAAGTCATAACAAGGGAAGACTGGGAGAAGAAGCTCAAGGATGTAAAAATTAAGAAAGAAGACATGAATAAATTGGTGATGAACTTTCTTGTCACCGAGGGTTATGTTGATGCTGCTGAGAAATTCCGAAAGGAATCTGGAACTGAACCAGATATTGATCTTGCAACAATCACAGACCGTATGGCTGTCAAGAAGGCTGTACAGTGTGGTAATGTGGAGGATGCAATTGAGAAAGTGAATGACTTAAACCCTGAGATTTTGGATACAAATCCCCAATTATTTTTCCATCTCCAACAGCAACGGTTGATAGAACTAATTCGGAATGGAAAAGTAGAAGAAGCCCTTGAGTTTGCTCAGGAAGAGCTAGCGCCAAGGGGAGAAGAAAATCAAAGCTTTTTAGAAGAGTTGGAGAGGACTGTTGCACTGCTAGCCTTTGAAGATGTGTCCAATTGTCCTGTTGGAGAGCTTCTGGACATATCACAACGCCTAAAGACAGCAAGTGAGGTGAATGCGGCCATCCTTACCAGCCAGAGTCATGAAAAAGACCCGAAGCTACCAAGCTTGTTGAAGATGCTGATATGGGCCCAGAACCAGCTTGATGAAAAAGCTGCTTATCCTCGGATAAATGATCTTTCCACTGCCATGCTAGAAGACCCTACTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

243

Amino Acids

27.48

Weight (kDa)

4.71

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
AciI	CCGC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	500, 631
AluBI	AGCT	8 cut(s)	97, 427, 456, 529, 616, 624, 658, 671
AluI	AGCT	8 cut(s)	97, 427, 456, 529, 616, 624, 658, 671
AoxI	GGCC	2 cut(s)	576, 645
ApaI	GGGCCC	1 cut(s)	649
ApeKI	GCWGC	3 cut(s)	53, 176, 671
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	645, 646
AsuHPI	GGTGA	3 cut(s)	148, 151, 580
AsuNHI	GCTAGC	2 cut(s)	427, 490
BaeGI	GKGCMC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	649
BbsI	GAAGAC	3 cut(s)	87, 129, 720
BbvI	GCAGC	3 cut(s)	40, 163, 658
BccI	CCATC	2 cut(s)	357, 587
BciVI	GTATCC	1 cut(s)	319
BfaI	CTAG	4 cut(s)	428, 491, 710, 727
BfoI	RGCGCY	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	4 cut(s)	54, 177, 576, 672
BlsI	GCNGC	4 cut(s)	55, 178, 577, 673
BmgT120I	GGNCC	2 cut(s)	645, 646
BmiI	GGNNCC	1 cut(s)	647
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	3 cut(s)	163, 274, 624
BmtI	GCTAGC	2 cut(s)	431, 494
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	3 cut(s)	87, 129, 720
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	2 cut(s)	83, 428
BsaBI	GATNNNNATC	2 cut(s)	219, 330
BsaJI	CCNNGG	3 cut(s)	159, 434, 680
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	2 cut(s)	219, 330
BseDI	CCNNGG	3 cut(s)	159, 434, 680
BseGI	GGATG	3 cut(s)	109, 289, 579
BseJI	GATNNNNATC	2 cut(s)	219, 330
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	171, 306, 431
BseNI	ACTGG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	3 cut(s)	40, 163, 658
BshFI	GGCC	2 cut(s)	578, 647
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	578, 647
Bsp120I	GGGCCC	1 cut(s)	645
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	39, 220, 691
BspACI	CCGC	1 cut(s)	575
BspANI	GGCC	2 cut(s)	578, 647
BspCNI	CTCAG	3 cut(s)	172, 307, 430
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	647
BspOI	GCTAGC	2 cut(s)	431, 494
BspQI	GCTCTTC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	159, 434, 680
BssMI	GATC	3 cut(s)	39, 220, 691
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	6 cut(s)	9, 242, 267, 366, 481, 724
Bst6I	CTCTTC	2 cut(s)	417, 459
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	262
BstC8I	GCNNGC	2 cut(s)	429, 492
BstDEI	CTNAG	3 cut(s)	180, 315, 417
BstF5I	GGATG	3 cut(s)	109, 289, 579
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	3 cut(s)	42, 223, 694
BstMBI	GATC	3 cut(s)	39, 220, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 491
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	40, 163, 658
BstV2I	GAAGAC	3 cut(s)	87, 129, 720
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	578, 647
BtsCI	GGATG	3 cut(s)	109, 289, 579
BtsI	GCAGTG	2 cut(s)	485, 699
BtsIMutI	CAGTG	4 cut(s)	5, 272, 485, 699
Cac8I	GCNNGC	2 cut(s)	429, 492
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	645, 646
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	3 cut(s)	127, 599, 706
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	3 cut(s)	180, 315, 417
DpnI	GATC	3 cut(s)	41, 222, 693
DpnII	GATC	3 cut(s)	39, 220, 691
DrdI	GACNNNNNNGTC	1 cut(s)	722
DseDI	GACNNNNNNGTC	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	417, 459
EarI	CTCTTC	2 cut(s)	417, 459
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	3 cut(s)	130, 602, 709
FaiI	YATR	8 cut(s)	71, 128, 168, 245, 539, 600, 643, 707
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	3 cut(s)	126, 598, 705
Fnu4HI	GCNGC	4 cut(s)	54, 177, 576, 672
FokI	GGATG	3 cut(s)	116, 296, 566
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	4 cut(s)	54, 177, 576, 672
FspBI	CTAG	4 cut(s)	428, 491, 710, 727
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	4 cut(s)	54, 177, 576, 672
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	578, 647
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	130, 602, 709
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HindIII	AAGCTT	2 cut(s)	454, 622
HinfI	GANTC	2 cut(s)	197, 595
HphI	GGTGA	3 cut(s)	148, 151, 580
Hpy188I	TCNGA	3 cut(s)	191, 384, 684
Hpy188III	TCNNGA	6 cut(s)	13, 201, 253, 419, 533, 599
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	6 cut(s)	9, 242, 267, 366, 481, 724
HpyCH4V	TGCA	4 cut(s)	35, 227, 287, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 491
HpyF3I	CTNAG	3 cut(s)	180, 315, 417
Hsp92II	CATG	3 cut(s)	130, 602, 709
HspAI	GCGC	1 cut(s)	431
Kzo9I	GATC	3 cut(s)	39, 220, 691
LguI	GCTCTTC	1 cut(s)	417
Lsp1109I	GCAGC	3 cut(s)	40, 163, 658
LweI	GCATC	3 cut(s)	163, 274, 624
MaeI	CTAG	4 cut(s)	428, 491, 710, 727
MaeIII	GTNAC	2 cut(s)	3, 154
MalI	GATC	3 cut(s)	41, 222, 693
MboI	GATC	3 cut(s)	39, 220, 691
MfeI	CAATTG	2 cut(s)	288, 511
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	7 cut(s)	111, 134, 185, 288, 338, 378, 511
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	3 cut(s)	379, 450, 502
MnlI	CCTC	5 cut(s)	154, 274, 468, 559, 690
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	2 cut(s)	114, 308
MslI	CAYNNNNRTG	1 cut(s)	704
MunI	CAATTG	2 cut(s)	288, 511
Mva1269I	GAATGC	1 cut(s)	577
MwoI	GCNNNNNNNGC	2 cut(s)	53, 491
NdeII	GATC	3 cut(s)	39, 220, 691
NheI	GCTAGC	2 cut(s)	427, 490
NlaIII	CATG	3 cut(s)	130, 602, 709
NlaIV	GGNNCC	1 cut(s)	647
NmuCI	GTSAC	2 cut(s)	3, 154
PagI	TCATGA	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	417
PctI	GAATGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	55, 178, 577, 673
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
PspN4I	GGNNCC	1 cut(s)	647
PspOMI	GGGCCC	1 cut(s)	645
PspPI	GGNCC	2 cut(s)	645, 646
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	704
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	114, 308
SatI	GCNGC	4 cut(s)	54, 177, 576, 672
Sau3AI	GATC	3 cut(s)	39, 220, 691
Sau96I	GGNCC	2 cut(s)	645, 646
SchI	GAGTC	1 cut(s)	604
SduI	GDGCHC	1 cut(s)	649
SetI	ASST	9 cut(s)	99, 429, 458, 531, 570, 618, 626, 660, 673
SfaNI	GCATC	3 cut(s)	163, 274, 624
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	98, 407
SmoI	CTYRAG	2 cut(s)	98, 407
Sse9I	AATT	7 cut(s)	111, 134, 185, 288, 338, 378, 511
SsiI	CCGC	1 cut(s)	575
SspMI	CTAG	4 cut(s)	428, 491, 710, 727
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	6 cut(s)	9, 242, 267, 366, 481, 724
TaqI	TCGA	2 cut(s)	42, 59
TasI	AATT	7 cut(s)	111, 134, 185, 288, 338, 378, 511
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	114, 308
Tru9I	TTAA	2 cut(s)	114, 308
TscAI	CASTG	4 cut(s)	12, 272, 492, 706
TseFI	GTSAC	2 cut(s)	3, 154
TseI	GCWGC	3 cut(s)	53, 176, 671
Tsp45I	GTSAC	2 cut(s)	3, 154
TspDTI	ATGAA	5 cut(s)	14, 143, 158, 615, 678
TspRI	CASTG	4 cut(s)	12, 272, 492, 706
XapI	RAATTY	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	4 cut(s)	428, 491, 710, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.