Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Reverse (-)

58569594 .. 58570938

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0427200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCGGCAAATAGTACCTTGATCGGCGAACAGGGTTATGATCGAGCTGAGGAACTGAAGCAATTCGACGACTCCAAGCTCGGAGTAAAAGGCCTCGTCGACTCGGGTCTCTCCTCCATCCCTCGAATCTTTATCCACCCGCCCGAAACATTACAGCAATTGCAGCCCACGACCCGACCCGACGCCCAACCAATCCCCACCTCCGGTCGCCGCTCCTCAATTGTCCACCAAGTCAGCGGCGCGTGCCGCAACTTCGGTTTCTTCCAGATCACCAACCACGGCATACCGTCGGTGGTTCTCGACCGTACGATCGCCGCCGTCAAGGCCTTCCACGAGCAGCCTCCGGAAGTCAAAGCGCGGTTCTACCGCAGAGAGATGATAGGCCATGGCGTAGCGTATCTATCCAACGTTGACCTGTACACCTCCAAAGCCGCCAGCTGGCGCGACACGCTTCTGGTGAAGCTCGGCCCTTTGCTGGAGGCCGCCGACGACGTTCCGAAGATTTGTAGGGACGAAATAGTTGAGTGGGACGGGGAGATCCGACGGCTGGGAGAGGAGCTTCTGGGGCTGGGGCTGGTGAGTGAAGGGCTGGGATTGCGAGCGGAGAAGCTGAAGGAGATGACGTGTCTGGGTGGGAGGGCGATGGCGGGCCACTACTACCCGCCCTGCCCGCAGCCTGATCTAACGGTTGGGCTTGTTTCACACAGTGACCCTGGAGTATTGACCGTGCTGCTTCAAGATCATATCGGTGGGTTGCAGGTTAAGCACGATGGGGCTTGGGTGGATGTGAAACCTGTCCCCGGTGCTCTTGTGATCAACGTTGGTGATGTACTCCAGATTATTTCGAACGAGGAATACAAAAGTGTGGATGACCGGGTGTTGGCGAATCCACACAACGAGGCGCGTCTCTCAATAGCCGTGCTTTTGAATCCGAGCAATAGAGAGGGCGTGTTTGGTCCATTTCCGGAGCTGGTCTCGCCAGAGAAGCCAGCTCTCTACAAAGAGTTCAAGTTCTCGGAATTCCTGATGAGGTTCTTCCAGAAGGAATTGAATGACAAATCTTTGGTAAATTACTTTAAGCTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

362

Amino Acids

40.05

Weight (kDa)

5.91

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	67 - 152	3.7e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	214 - 311	2.1e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	748
AccBSI	CCGCTC	2 cut(s)	213, 602
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	4 cut(s)	242, 358, 444, 904
AccIII	TCCGGA	2 cut(s)	343, 964
AclI	AACGTT	2 cut(s)	408, 819
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	1 cut(s)	1019
AcuI	CTGAAG	2 cut(s)	77, 632
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	707
AfaI	GTAC	4 cut(s)	16, 307, 419, 831
AfiI	CCNNNNNNNGG	6 cut(s)	203, 438, 475, 547, 800, 880
AflIII	ACRYGT	1 cut(s)	623
AgsI	TTSAA	4 cut(s)	737, 928, 1009, 1051
AjiI	CACGTC	1 cut(s)	624
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	9 cut(s)	47, 79, 438, 463, 559, 610, 970, 992, 1081
AluI	AGCT	9 cut(s)	47, 79, 438, 463, 559, 610, 970, 992, 1081
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	3 cut(s)	113, 911, 979
AlwI	GGATC	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	103
Aor13HI	TCCGGA	2 cut(s)	343, 964
AoxI	GGCC	6 cut(s)	91, 324, 382, 466, 480, 649
ApeKI	GCWGC	5 cut(s)	163, 337, 673, 730, 1081
ApoI	RAATTY	1 cut(s)	1019
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	4 cut(s)	242, 358, 444, 904
AspS9I	GGNCC	3 cut(s)	467, 649, 956
AsuC2I	CCSGG	2 cut(s)	801, 875
AsuHPI	GGTGA	4 cut(s)	262, 469, 589, 836
AsuII	TTCGAA	1 cut(s)	845
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	956
BauI	CACGAG	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	808
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	5 cut(s)	175, 349, 685, 717, 1068
BccI	CCATC	3 cut(s)	125, 637, 764
BceAI	ACGGC	4 cut(s)	295, 302, 560, 902
BciT130I	CCWGG	1 cut(s)	714
BclI	TGATCA	1 cut(s)	813
BcnI	CCSGG	2 cut(s)	801, 875
BcoDI	GTCTC	3 cut(s)	113, 911, 979
BfuAI	ACCTGC	1 cut(s)	748
BglI	GCCNNNNNGGC	1 cut(s)	323
Bme1390I	CCNGG	3 cut(s)	714, 801, 875
Bme18I	GGWCC	1 cut(s)	956
BmeT110I	CYCGRG	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	624
BmgT120I	GGNCC	3 cut(s)	467, 649, 956
BmrFI	CCNGG	3 cut(s)	714, 801, 875
BoxI	GACNNNNGTC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	959, 991
BpmI	CTGGAG	3 cut(s)	497, 735, 818
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu14I	TTCGAA	1 cut(s)	845
BpuMI	CCSGG	2 cut(s)	801, 875
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	2 cut(s)	113, 979
BsaJI	CCNNGG	4 cut(s)	277, 385, 712, 799
BsaWI	WCCGGW	3 cut(s)	203, 343, 964
BsaXI	ACNNNNNCTCC	2 cut(s)	608, 638
Bsc4I	CCNNNNNNNGG	6 cut(s)	203, 438, 475, 547, 800, 880
BseAI	TCCGGA	2 cut(s)	343, 964
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	4 cut(s)	277, 385, 712, 799
BseGI	GGATG	3 cut(s)	117, 790, 874
BseLI	CCNNNNNNNGG	6 cut(s)	203, 438, 475, 547, 800, 880
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	3 cut(s)	103, 205, 569
BseXI	GCAGC	5 cut(s)	175, 349, 685, 717, 1068
BseYI	CCCAGC	3 cut(s)	547, 568, 589
BsgI	GTGCAG	1 cut(s)	1067
Bsh1236I	CGCG	4 cut(s)	242, 358, 444, 904
Bsh1285I	CGRYCG	3 cut(s)	208, 304, 312
BshFI	GGCC	6 cut(s)	93, 326, 384, 468, 482, 651
BsiEI	CGRYCG	3 cut(s)	208, 304, 312
BsiHKAI	GWGCWC	1 cut(s)	808
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	5 cut(s)	204, 344, 801, 874, 965
BsiWI	CGTACG	1 cut(s)	305
BslFI	GGGAC	3 cut(s)	524, 542, 782
BslI	CCNNNNNNNGG	6 cut(s)	203, 438, 475, 547, 800, 880
BsmAI	GTCTC	3 cut(s)	113, 911, 979
BsmBI	CGTCTC	1 cut(s)	911
BsmFI	GGGAC	3 cut(s)	524, 542, 782
BsnI	GGCC	6 cut(s)	93, 326, 384, 468, 482, 651
Bso31I	GGTCTC	2 cut(s)	113, 979
BsoBI	CYCGRG	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp13I	TCCGGA	2 cut(s)	343, 964
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	8 cut(s)	21, 40, 267, 309, 537, 679, 739, 813
Bsp19I	CCATGG	1 cut(s)	385
BspANI	GGCC	6 cut(s)	93, 326, 384, 468, 482, 651
BspCNI	CTCAG	1 cut(s)	40
BspEI	TCCGGA	2 cut(s)	343, 964
BspFNI	CGCG	4 cut(s)	242, 358, 444, 904
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	1 cut(s)	532
BspT104I	TTCGAA	1 cut(s)	845
BspTNI	GGTCTC	2 cut(s)	113, 979
BsrBI	CCGCTC	2 cut(s)	213, 602
BsrGI	TGTACA	1 cut(s)	417
BssECI	CCNNGG	4 cut(s)	277, 385, 712, 799
BssMI	GATC	8 cut(s)	21, 40, 267, 309, 537, 679, 739, 813
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	385
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	5 cut(s)	288, 305, 688, 707, 727
BstACI	GRCGYC	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	7 cut(s)	244, 436, 440, 600, 649, 671, 990
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	2 cut(s)	277, 385
BstF5I	GGATG	3 cut(s)	117, 790, 874
BstFNI	CGCG	4 cut(s)	242, 358, 444, 904
BstHHI	GCGC	4 cut(s)	242, 358, 444, 904
BstKTI	GATC	8 cut(s)	24, 43, 270, 312, 540, 682, 742, 816
BstMAI	GTCTC	3 cut(s)	113, 911, 979
BstMBI	GATC	8 cut(s)	21, 40, 267, 309, 537, 679, 739, 813
BstMCI	CGRYCG	3 cut(s)	208, 304, 312
BstNI	CCWGG	1 cut(s)	714
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	712, 799, 873
BstUI	CGCG	4 cut(s)	242, 358, 444, 904
BstV1I	GCAGC	5 cut(s)	175, 349, 685, 717, 1068
BstX2I	RGATCY	1 cut(s)	537
BstYI	RGATCY	1 cut(s)	537
BsuRI	GGCC	6 cut(s)	93, 326, 384, 468, 482, 651
BtgI	CCRYGG	2 cut(s)	277, 385
BtgZI	GCGATG	1 cut(s)	656
BtrI	CACGTC	1 cut(s)	624
BtsCI	GGATG	3 cut(s)	117, 790, 874
BtsIMutI	CAGTG	2 cut(s)	712, 1084
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	7 cut(s)	244, 436, 440, 600, 649, 671, 990
CfoI	GCGC	4 cut(s)	242, 358, 444, 904
Cfr13I	GGNCC	3 cut(s)	467, 649, 956
CseI	GACGC	2 cut(s)	191, 893
Csp6I	GTAC	4 cut(s)	15, 306, 418, 830
CviAII	CATG	1 cut(s)	386
CviQI	GTAC	4 cut(s)	15, 306, 418, 830
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	8 cut(s)	23, 42, 269, 311, 539, 681, 741, 815
DpnII	GATC	8 cut(s)	21, 40, 267, 309, 537, 679, 739, 813
DraIII	CACNNNGTG	1 cut(s)	707
Eco130I	CCWWGG	1 cut(s)	385
Eco147I	AGGCCT	2 cut(s)	93, 326
Eco31I	GGTCTC	2 cut(s)	113, 979
Eco47I	GGWCC	1 cut(s)	956
Eco57I	CTGAAG	2 cut(s)	77, 632
Eco88I	CYCGRG	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	1019
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
Esp3I	CGTCTC	1 cut(s)	911
FaeI	CATG	1 cut(s)	389
FaiI	YATR	4 cut(s)	39, 284, 387, 744
FaqI	GGGAC	3 cut(s)	524, 542, 782
FatI	CATG	1 cut(s)	385
FauI	CCCGC	4 cut(s)	147, 640, 669, 678
FbaI	TGATCA	1 cut(s)	813
FblI	GTMKAC	1 cut(s)	99
FokI	GGATG	3 cut(s)	104, 797, 881
GlaI	GCGC	4 cut(s)	241, 357, 443, 903
GsaI	CCCAGC	3 cut(s)	551, 572, 593
GsuI	CTGGAG	3 cut(s)	497, 735, 818
HaeIII	GGCC	6 cut(s)	93, 326, 384, 468, 482, 651
HapII	CCGG	5 cut(s)	204, 344, 801, 874, 965
HgaI	GACGC	2 cut(s)	191, 893
HhaI	GCGC	4 cut(s)	242, 358, 444, 904
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	4 cut(s)	240, 356, 442, 902
HinP1I	GCGC	4 cut(s)	240, 356, 442, 902
HincII	GTYRAC	2 cut(s)	100, 412
HindII	GTYRAC	2 cut(s)	100, 412
HinfI	GANTC	5 cut(s)	71, 101, 126, 886, 928
HpaII	CCGG	5 cut(s)	204, 344, 801, 874, 965
HphI	GGTGA	4 cut(s)	262, 469, 589, 836
Hpy166II	GTNNAC	4 cut(s)	100, 226, 412, 420
Hpy188I	TCNGA	5 cut(s)	83, 498, 542, 933, 1018
Hpy188III	TCNNGA	8 cut(s)	265, 299, 344, 737, 835, 965, 1024, 1039
Hpy8I	GTNNAC	4 cut(s)	100, 226, 412, 420
Hpy99I	CGWCG	7 cut(s)	71, 101, 185, 292, 491, 494, 546
HpyAV	CCTTC	4 cut(s)	337, 578, 607, 1036
HpyCH4III	ACNGT	5 cut(s)	288, 305, 688, 707, 727
HpyCH4IV	ACGT	4 cut(s)	408, 492, 623, 819
HpyCH4V	TGCA	3 cut(s)	163, 757, 1084
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	4 cut(s)	408, 492, 623, 819
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	4 cut(s)	240, 356, 442, 902
Kpn2I	TCCGGA	2 cut(s)	343, 964
Ksp22I	TGATCA	1 cut(s)	813
Kzo9I	GATC	8 cut(s)	21, 40, 267, 309, 537, 679, 739, 813
LmnI	GCTCC	3 cut(s)	218, 556, 967
Lsp1109I	GCAGC	5 cut(s)	175, 349, 685, 717, 1068
MaeII	ACGT	4 cut(s)	408, 492, 623, 819
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	8 cut(s)	23, 42, 269, 311, 539, 681, 741, 815
MbiI	CCGCTC	2 cut(s)	213, 602
MboI	GATC	8 cut(s)	21, 40, 267, 309, 537, 679, 739, 813
MboII	GAAGA	3 cut(s)	253, 511, 1027
MfeI	CAATTG	2 cut(s)	158, 219
MflI	RGATCY	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	808
MluCI	AATT	6 cut(s)	62, 158, 219, 1019, 1046, 1069
MlyI	GAGTC	2 cut(s)	65, 95
MmeI	TCCRAC	2 cut(s)	429, 565
MroI	TCCGGA	2 cut(s)	343, 964
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	2 cut(s)	762, 1077
MslI	CAYNNNNRTG	1 cut(s)	747
MspA1I	CMGCKG	2 cut(s)	237, 438
MspI	CCGG	5 cut(s)	204, 344, 801, 874, 965
MspR9I	CCNGG	3 cut(s)	714, 801, 875
MunI	CAATTG	2 cut(s)	158, 219
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	4 cut(s)	242, 358, 444, 904
NciI	CCSGG	2 cut(s)	801, 875
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	8 cut(s)	21, 40, 267, 309, 537, 679, 739, 813
NlaIII	CATG	1 cut(s)	389
NmeAIII	GCCGAG	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	707
NspV	TTCGAA	1 cut(s)	845
PceI	AGGCCT	2 cut(s)	93, 326
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	3 cut(s)	126, 886, 928
Pfl23II	CGTACG	1 cut(s)	305
Ple19I	CGATCG	1 cut(s)	312
PleI	GAGTC	2 cut(s)	65, 95
PpsI	GAGTC	2 cut(s)	65, 95
PshAI	GACNNNNGTC	1 cut(s)	105
Psp1406I	AACGTT	2 cut(s)	408, 819
Psp6I	CCWGG	1 cut(s)	712
PspFI	CCCAGC	3 cut(s)	547, 568, 589
PspGI	CCWGG	1 cut(s)	712
PspLI	CGTACG	1 cut(s)	305
PspPI	GGNCC	3 cut(s)	467, 649, 956
PsrI	GAACNNNNNNTAC	2 cut(s)	839, 871
PsuI	RGATCY	1 cut(s)	537
PvuI	CGATCG	1 cut(s)	312
PvuII	CAGCTG	1 cut(s)	438
RsaI	GTAC	4 cut(s)	16, 307, 419, 831
RsaNI	GTAC	4 cut(s)	15, 306, 418, 830
RseI	CAYNNNNRTG	1 cut(s)	747
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	762, 1077
Sau3AI	GATC	8 cut(s)	21, 40, 267, 309, 537, 679, 739, 813
Sau96I	GGNCC	3 cut(s)	467, 649, 956
SchI	GAGTC	2 cut(s)	65, 95
ScrFI	CCNGG	3 cut(s)	714, 801, 875
SduI	GDGCHC	1 cut(s)	808
SfuI	TTCGAA	1 cut(s)	845
SinI	GGWCC	1 cut(s)	956
SmiMI	CAYNNNNRTG	1 cut(s)	747
Sse9I	AATT	6 cut(s)	62, 158, 219, 1019, 1046, 1069
SseBI	AGGCCT	2 cut(s)	93, 326
StuI	AGGCCT	2 cut(s)	93, 326
StyD4I	CCNGG	3 cut(s)	712, 799, 873
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	5 cut(s)	288, 305, 688, 707, 727
TaiI	ACGT	4 cut(s)	411, 495, 626, 822
TaqI	TCGA	6 cut(s)	43, 66, 99, 124, 300, 845
TasI	AATT	6 cut(s)	62, 158, 219, 1019, 1046, 1069
TatI	WGTACW	2 cut(s)	417, 829
TauI	GCSGC	7 cut(s)	8, 213, 240, 249, 317, 434, 485
TfiI	GAWTC	3 cut(s)	126, 886, 928
Tru1I	TTAA	2 cut(s)	762, 1077
Tru9I	TTAA	2 cut(s)	762, 1077
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	5 cut(s)	163, 337, 673, 730, 1081
Tsp45I	GTSAC	1 cut(s)	707
TspRI	CASTG	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	956
XapI	RAATTY	1 cut(s)	1019
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.