Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Reverse (-)

4455498 .. 4458160

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCACTTTTCTTGTCGTCGACGATTGATCAGGCTTATCATCATCAGCTCGCAGAAATCGAAGCGGAACTGAAAGCAGCAATGGCTGGATCGAAGAAAGTAATAACGAGGGATGAGTGGGAGAAGAAGCTTAATGATGTGAAGATCAAGAAGGAGGACATGAATAAACTGGTGATGAATTTCCTTGTGACTGAGGGTTATGTGGATGCCGCGGAGAAATTCCGAAAGGAATCTGGAACCGAACCAGATATTGATCTTGCAACAATCACTGACCGCATGGCGGTCAAGAAGGCGGTACAATGTGGTAATGTGGAGGATGCAATTGAGAAGGTGAACGACTTAAACCCGGAGATTCTGGACACAAATCCCCAGTTATTTTTCCATCTCCAACAGCAAAGGTTGATAGAGCTAATTAGGAATGGAAAGGTAGAAGAGGCTCTTGAGTTTGCTCAGGAAGAGCTAGCACCAAGAGGAGAAGAAAATCAAAGCTTTTTAGAAGAGTTGGAGAGGACTGTTGCACTTCTAGCTTTTGAAGATGTGTCCAACTGTCCTGTAGGAGAGCTTTTGGACATATCACAGCGCCTAAAGACAGCTAGTGAAGTGAATGCCGCCATCCTCACTAGCCAGAGTCATGAAAAAGACCCGAAACTTCCAAGCTTGTTGAAGATGCTCATATGGGCCCAGAACCAGCTTGATGAGAAAGCTCACTATCCTCGGATAAACGATCTATCCACTGCCAGGCTAGAAGACCCTAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

253

Amino Acids

28.66

Weight (kDa)

4.78

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	52 - 78	3.2e-09	LisH
CTLH	PF10607	89 - 231	3e-38	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	755
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	1 cut(s)	212
AciI	CCGC	7 cut(s)	65, 210, 212, 274, 281, 293, 609
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	178, 218
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	280, 738
AgsI	TTSAA	2 cut(s)	533, 664
AjnI	CCWGG	1 cut(s)	737
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	678
ApaI	GGGCCC	1 cut(s)	682
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	2 cut(s)	178, 218
AspLEI	GCGC	1 cut(s)	582
AspS9I	GGNCC	2 cut(s)	678, 679
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	184, 343
AsuNHI	GCTAGC	1 cut(s)	460
BaeGI	GKGCMC	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	682
BbsI	GAAGAC	1 cut(s)	753
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	2 cut(s)	390, 620
BciT130I	CCWGG	1 cut(s)	739
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	347
BfaI	CTAG	6 cut(s)	461, 524, 594, 621, 743, 753
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	583
BisI	GCNGC	3 cut(s)	78, 210, 609
BlsI	GCNGC	3 cut(s)	79, 211, 610
Bme1390I	CCNGG	2 cut(s)	347, 739
BmgT120I	GGNCC	2 cut(s)	678, 679
BmiI	GGNNCC	2 cut(s)	238, 680
BmrFI	CCNGG	2 cut(s)	347, 739
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	196, 307, 657
BmtI	GCTAGC	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	753
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	210, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 738
Bse1I	ACTGG	2 cut(s)	174, 370
Bse3DI	GCAATG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	739
BseDI	CCNNGG	2 cut(s)	210, 713
BseGI	GGATG	4 cut(s)	118, 211, 322, 612
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	280, 738
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	183, 464
BseNI	ACTGG	2 cut(s)	174, 370
BseRI	GAGGAG	1 cut(s)	486
BseSI	GKGCMC	1 cut(s)	682
BseXI	GCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	680
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	280, 738
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	680
Bsp120I	GGGCCC	1 cut(s)	678
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	5 cut(s)	28, 89, 144, 253, 724
BspACI	CCGC	7 cut(s)	65, 210, 212, 274, 281, 293, 609
BspANI	GGCC	1 cut(s)	680
BspCNI	CTCAG	2 cut(s)	184, 463
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	238, 680
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	97
BspQI	GCTCTTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	174, 370
BssECI	CCNNGG	2 cut(s)	210, 713
BssMI	GATC	5 cut(s)	28, 89, 144, 253, 724
Bst2UI	CCWGG	1 cut(s)	739
Bst4CI	ACNGT	2 cut(s)	514, 548
Bst6I	CTCTTC	3 cut(s)	426, 450, 492
BstC8I	GCNNGC	2 cut(s)	51, 462
BstDEI	CTNAG	2 cut(s)	192, 450
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	4 cut(s)	118, 211, 322, 612
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	5 cut(s)	31, 92, 147, 256, 727
BstMBI	GATC	5 cut(s)	28, 89, 144, 253, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 524
BstNI	CCWGG	1 cut(s)	739
BstSCI	CCNGG	2 cut(s)	345, 737
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	1 cut(s)	682
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	753
BsuRI	GGCC	1 cut(s)	680
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	118, 211, 322, 612
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	2 cut(s)	267, 732
Cac8I	GCNNGC	2 cut(s)	51, 462
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	1 cut(s)	582
Cfr13I	GGNCC	2 cut(s)	678, 679
Cfr42I	CCGCGG	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	3 cut(s)	160, 277, 632
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	2 cut(s)	192, 450
DpnI	GATC	5 cut(s)	30, 91, 146, 255, 726
DpnII	GATC	5 cut(s)	28, 89, 144, 253, 724
DrdI	GACNNNNNNGTC	1 cut(s)	755
DseDI	GACNNNNNNGTC	1 cut(s)	755
Eam1104I	CTCTTC	3 cut(s)	426, 450, 492
EarI	CTCTTC	3 cut(s)	426, 450, 492
Eco24I	GRGCYC	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	737
EcoT38I	GRGCYC	1 cut(s)	682
FaeI	CATG	3 cut(s)	163, 280, 635
FaiI	YATR	7 cut(s)	161, 201, 278, 572, 633, 674, 676
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	3 cut(s)	159, 276, 631
FauNDI	CATATG	1 cut(s)	674
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	78, 210, 609
FokI	GGATG	4 cut(s)	125, 218, 329, 599
FriOI	GRGCYC	1 cut(s)	682
Fsp4HI	GCNGC	3 cut(s)	78, 210, 609
FspBI	CTAG	6 cut(s)	461, 524, 594, 621, 743, 753
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	3 cut(s)	78, 210, 609
HaeII	RGCGCY	1 cut(s)	583
HaeIII	GGCC	1 cut(s)	680
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	582
Hin1II	CATG	3 cut(s)	163, 280, 635
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	3 cut(s)	128, 487, 655
HinfI	GANTC	3 cut(s)	230, 352, 628
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	184, 343
Hpy166II	GTNNAC	2 cut(s)	21, 334
Hpy188I	TCNGA	2 cut(s)	224, 717
Hpy188III	TCNNGA	7 cut(s)	148, 234, 286, 356, 440, 452, 632
Hpy8I	GTNNAC	2 cut(s)	21, 334
Hpy99I	CGWCG	2 cut(s)	22, 25
HpyAV	CCTTC	3 cut(s)	145, 283, 322
HpyCH4III	ACNGT	2 cut(s)	514, 548
HpyCH4V	TGCA	3 cut(s)	260, 320, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 524
HpyF3I	CTNAG	2 cut(s)	192, 450
Hsp92II	CATG	3 cut(s)	163, 280, 635
HspAI	GCGC	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	28, 89, 144, 253, 724
LguI	GCTCTTC	1 cut(s)	450
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	3 cut(s)	196, 307, 657
MaeI	CTAG	6 cut(s)	461, 524, 594, 621, 743, 753
MaeIII	GTNAC	2 cut(s)	3, 187
MalI	GATC	5 cut(s)	30, 91, 146, 255, 726
MboI	GATC	5 cut(s)	28, 89, 144, 253, 724
MfeI	CAATTG	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	4 cut(s)	178, 218, 321, 411
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	3 cut(s)	412, 483, 567
MnlI	CCTC	9 cut(s)	102, 148, 187, 307, 427, 464, 501, 626, 723
MseI	TTAA	2 cut(s)	132, 341
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	347, 739
MunI	CAATTG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	739
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	83, 524
NciI	CCSGG	1 cut(s)	347
NdeI	CATATG	1 cut(s)	674
NdeII	GATC	5 cut(s)	28, 89, 144, 253, 724
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	163, 280, 635
NlaIV	GGNNCC	2 cut(s)	238, 680
NmuCI	GTSAC	2 cut(s)	3, 187
PagI	TCATGA	1 cut(s)	631
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	230, 352
PkrI	GCNGC	3 cut(s)	79, 211, 610
PleI	GAGTC	1 cut(s)	636
PpsI	GAGTC	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	737
PspGI	CCWGG	1 cut(s)	737
PspN4I	GGNNCC	2 cut(s)	238, 680
PspOMI	GGGCCC	1 cut(s)	678
PspPI	GGNCC	2 cut(s)	678, 679
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SacII	CCGCGG	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	132, 341
SatI	GCNGC	3 cut(s)	78, 210, 609
Sau3AI	GATC	5 cut(s)	28, 89, 144, 253, 724
Sau96I	GGNCC	2 cut(s)	678, 679
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	2 cut(s)	347, 739
SduI	GDGCHC	1 cut(s)	682
SfaNI	GCATC	3 cut(s)	196, 307, 657
SfcI	CTRYAG	1 cut(s)	552
Sfr303I	CCGCGG	1 cut(s)	213
SgrBI	CCGCGG	1 cut(s)	213
SgrDI	CGTCGACG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	4 cut(s)	178, 218, 321, 411
SsiI	CCGC	7 cut(s)	65, 210, 212, 274, 281, 293, 609
SspMI	CTAG	6 cut(s)	461, 524, 594, 621, 743, 753
StyD4I	CCNGG	2 cut(s)	345, 737
TaaI	ACNGT	2 cut(s)	514, 548
TaqI	TCGA	3 cut(s)	20, 60, 92
TasI	AATT	4 cut(s)	178, 218, 321, 411
TauI	GCSGC	2 cut(s)	212, 611
TfiI	GAWTC	2 cut(s)	230, 352
Tru1I	TTAA	2 cut(s)	132, 341
Tru9I	TTAA	2 cut(s)	132, 341
TscAI	CASTG	2 cut(s)	274, 739
TseFI	GTSAC	2 cut(s)	3, 187
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	2 cut(s)	3, 187
TspDTI	ATGAA	3 cut(s)	176, 191, 648
TspRI	CASTG	2 cut(s)	274, 739
XapI	RAATTY	2 cut(s)	178, 218
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	6 cut(s)	461, 524, 594, 621, 743, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.