Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Reverse (-)

5409508 .. 5412605

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031461

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCTGGATCTCCTTAAGACCCAAATCCAAGTCCGACCCGAAAACAAATCAAAACAAAAACCCAGAGAACCACCGAGAACACGCCCATCGCCGGAATCCCAATTACTCTCACTCACACTCATCGGAGAGCTCTCGACACCGCTCCGAAGGGCGAGAGATTTGAAGAATGAGCCTCGAGGCGGCGGCGCACTGATGTCACTTTTCTTGTCGTCGACGATTGATCAGGCTTATCATCAGCTCGCAGAAATCGAAGCGGAACTGAAAGCAGCAATGGCTGGATCGAAGAAAGTGATAACGAGGGAAGAGTGGGAGAAGAAGCTTAATGATGTGAAGATCAAGAAAGAGGACATGAATAAACTGGTGATGAATTTCCTTGTGACTGAGGGTTATGTGGATGCGGCGGAGAAATTCCGAAAGGAATCTGGAACCGAACATATTGATCTTGCAACAATCACTGACCGCATGGCGGTCAAGAAGGCGGTACAATGTGGTAATGTGGAGGATGCAATTGAGAAAGTGAACGACTTAAACCCGGAGATTCTGGACACAAATCCCCAGTTATTTTTCCATCTCCAACAGCAAAGGTTGATAGAGCTAATTAGGAATGGAAAGGTAGAAGAGGCTCTTGAGTTTGCTCAGGAAGAGCTAGCACCAAGAGGAGAAGAAAATCAAAGCTTTTTAGAAGAGTTGGAGAGGACTGTTGCACTTCTGGCTTTTGAAGATGTGTCCAACTGTCCTGTAGGAGAGCTTTTGGACATATCACAGCGCCTAAAGACAGCTAGTGAAGTGAATGCCGCCATCCTCACTAGCCAGAGTCATGAAAAAGATCCAAAACTTCCAAGCTTGTTGAAGATGCTCATATGGGCCCAGAACCAGCTTGATGAGAAAGCTCACTATCCTCGGATAAACGATCTATCCACTGCCAGGCTAGAAGACCCTAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

316

Amino Acids

35.66

Weight (kDa)

5.26

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	115 - 141	4.3e-09	LisH
CTLH	PF10607	151 - 293	5.3e-38	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	941
AbsI	CCTCGAGG	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	212
AclWI	GGATC	3 cut(s)	15, 286, 821
AcsI	RAATTY	2 cut(s)	367, 407
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	4 cut(s)	91, 179, 466, 924
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	163, 719, 850
AjnI	CCWGG	1 cut(s)	923
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	3 cut(s)	15, 286, 821
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	1 cut(s)	864
ApaI	GGGCCC	1 cut(s)	868
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	2 cut(s)	367, 407
AspLEI	GCGC	2 cut(s)	188, 768
AspS9I	GGNCC	2 cut(s)	864, 865
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	373
AsuNHI	GCTAGC	1 cut(s)	646
AvaI	CYCGRG	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	868
BanII	GRGCYC	2 cut(s)	132, 868
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	3 cut(s)	94, 576, 806
BciT130I	CCWGG	1 cut(s)	925
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	533
BfaI	CTAG	5 cut(s)	647, 780, 807, 929, 939
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	769
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	5 cut(s)	181, 184, 267, 399, 795
BlsI	GCNGC	5 cut(s)	182, 185, 268, 400, 796
Bme1390I	CCNGG	2 cut(s)	533, 925
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	864, 865
BmiI	GGNNCC	2 cut(s)	427, 866
BmrFI	CCNGG	2 cut(s)	533, 925
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	3 cut(s)	385, 493, 843
BmtI	GCTAGC	1 cut(s)	650
BmuI	ACTGGG	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	939
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	899
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 179, 466, 924
Bse1I	ACTGG	2 cut(s)	363, 556
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	925
BseDI	CCNNGG	1 cut(s)	899
BseGI	GGATG	3 cut(s)	400, 508, 798
BseLI	CCNNNNNNNGG	4 cut(s)	91, 179, 466, 924
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	372, 650
BseNI	ACTGG	2 cut(s)	363, 556
BseRI	GAGGAG	1 cut(s)	672
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	866
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	92, 533
BslI	CCNNNNNNNGG	4 cut(s)	91, 179, 466, 924
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	1 cut(s)	866
BsoBI	CYCGRG	1 cut(s)	174
Bsp120I	GGGCCC	1 cut(s)	864
Bsp1286I	GDGCHC	2 cut(s)	132, 868
Bsp143I	GATC	7 cut(s)	7, 220, 278, 333, 439, 826, 910
BspANI	GGCC	1 cut(s)	866
BspCNI	CTCAG	2 cut(s)	373, 649
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	2 cut(s)	427, 866
BspOI	GCTAGC	1 cut(s)	650
BspPI	GGATC	3 cut(s)	15, 286, 821
BspQI	GCTCTTC	1 cut(s)	636
BspTI	CTTAAG	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	363, 556
BssECI	CCNNGG	1 cut(s)	899
BssMI	GATC	7 cut(s)	7, 220, 278, 333, 439, 826, 910
Bst2UI	CCWGG	1 cut(s)	925
Bst4CI	ACNGT	2 cut(s)	700, 734
Bst6I	CTCTTC	4 cut(s)	297, 612, 636, 678
BstAFI	CTTAAG	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	240, 648
BstDEI	CTNAG	2 cut(s)	381, 636
BstF5I	GGATG	3 cut(s)	400, 508, 798
BstH2I	RGCGCY	1 cut(s)	769
BstHHI	GCGC	2 cut(s)	188, 768
BstKTI	GATC	7 cut(s)	10, 223, 281, 336, 442, 829, 913
BstMBI	GATC	7 cut(s)	7, 220, 278, 333, 439, 826, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 710
BstNI	CCWGG	1 cut(s)	925
BstSCI	CCNGG	2 cut(s)	531, 923
BstSFI	CTRYAG	1 cut(s)	738
BstSLI	GKGCMC	1 cut(s)	868
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	2 cut(s)	7, 826
BstYI	RGATCY	2 cut(s)	7, 826
BsuRI	GGCC	1 cut(s)	866
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	400, 508, 798
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	3 cut(s)	188, 453, 918
Cac8I	GCNNGC	2 cut(s)	240, 648
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	2 cut(s)	188, 768
Cfr13I	GGNCC	2 cut(s)	864, 865
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	3 cut(s)	349, 463, 818
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	2 cut(s)	381, 636
DpnI	GATC	7 cut(s)	9, 222, 280, 335, 441, 828, 912
DpnII	GATC	7 cut(s)	7, 220, 278, 333, 439, 826, 910
DrdI	GACNNNNNNGTC	1 cut(s)	941
DseDI	GACNNNNNNGTC	1 cut(s)	941
Eam1104I	CTCTTC	4 cut(s)	297, 612, 636, 678
EarI	CTCTTC	4 cut(s)	297, 612, 636, 678
EciI	GGCGGA	1 cut(s)	416
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	132, 868
Eco53kI	GAGCTC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	923
EcoT38I	GRGCYC	2 cut(s)	132, 868
FaeI	CATG	3 cut(s)	352, 466, 821
FaiI	YATR	8 cut(s)	350, 390, 435, 464, 758, 819, 860, 862
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	3 cut(s)	348, 462, 817
FauNDI	CATATG	1 cut(s)	860
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	5 cut(s)	181, 184, 267, 399, 795
FokI	GGATG	3 cut(s)	407, 515, 785
FriOI	GRGCYC	2 cut(s)	132, 868
Fsp4HI	GCNGC	5 cut(s)	181, 184, 267, 399, 795
FspBI	CTAG	5 cut(s)	647, 780, 807, 929, 939
GlaI	GCGC	2 cut(s)	187, 767
GluI	GCNGC	5 cut(s)	181, 184, 267, 399, 795
HaeII	RGCGCY	1 cut(s)	769
HaeIII	GGCC	1 cut(s)	866
HapII	CCGG	2 cut(s)	92, 533
HhaI	GCGC	2 cut(s)	188, 768
Hin1II	CATG	3 cut(s)	352, 466, 821
Hin6I	GCGC	2 cut(s)	186, 766
HinP1I	GCGC	2 cut(s)	186, 766
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HindIII	AAGCTT	3 cut(s)	317, 673, 841
HinfI	GANTC	4 cut(s)	95, 419, 538, 814
HpaII	CCGG	2 cut(s)	92, 533
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	213, 520
Hpy188I	TCNGA	5 cut(s)	35, 125, 146, 413, 903
Hpy188III	TCNNGA	8 cut(s)	133, 337, 423, 472, 542, 626, 638, 818
Hpy8I	GTNNAC	2 cut(s)	213, 520
Hpy99I	CGWCG	2 cut(s)	214, 217
HpyAV	CCTTC	2 cut(s)	141, 469
HpyCH4III	ACNGT	2 cut(s)	700, 734
HpyCH4V	TGCA	3 cut(s)	446, 506, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 710
HpyF3I	CTNAG	2 cut(s)	381, 636
Hsp92II	CATG	3 cut(s)	352, 466, 821
HspAI	GCGC	2 cut(s)	186, 766
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	7, 220, 278, 333, 439, 826, 910
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	3 cut(s)	385, 493, 843
MaeI	CTAG	5 cut(s)	647, 780, 807, 929, 939
MaeIII	GTNAC	2 cut(s)	195, 376
MalI	GATC	7 cut(s)	9, 222, 280, 335, 441, 828, 912
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	7 cut(s)	7, 220, 278, 333, 439, 826, 910
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	2 cut(s)	7, 826
MhlI	GDGCHC	2 cut(s)	132, 868
MluCI	AATT	5 cut(s)	101, 367, 407, 507, 597
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	4 cut(s)	58, 598, 669, 753
MseI	TTAA	3 cut(s)	15, 321, 527
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	2 cut(s)	92, 533
MspR9I	CCNGG	2 cut(s)	533, 925
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	1 cut(s)	925
MwoI	GCNNNNNNNGC	2 cut(s)	272, 710
NciI	CCSGG	1 cut(s)	533
NdeI	CATATG	1 cut(s)	860
NdeII	GATC	7 cut(s)	7, 220, 278, 333, 439, 826, 910
NheI	GCTAGC	1 cut(s)	646
NlaIII	CATG	3 cut(s)	352, 466, 821
NlaIV	GGNNCC	2 cut(s)	427, 866
NmuCI	GTSAC	2 cut(s)	195, 376
PaeR7I	CTCGAG	1 cut(s)	174
PagI	TCATGA	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	3 cut(s)	95, 419, 538
PkrI	GCNGC	5 cut(s)	182, 185, 268, 400, 796
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	923
PspGI	CCWGG	1 cut(s)	923
PspN4I	GGNNCC	2 cut(s)	427, 866
PspOMI	GGGCCC	1 cut(s)	864
PspPI	GGNCC	2 cut(s)	864, 865
PspXI	VCTCGAGB	1 cut(s)	174
PsuI	RGATCY	2 cut(s)	7, 826
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	15, 321, 527
SatI	GCNGC	5 cut(s)	181, 184, 267, 399, 795
Sau3AI	GATC	7 cut(s)	7, 220, 278, 333, 439, 826, 910
Sau96I	GGNCC	2 cut(s)	864, 865
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	2 cut(s)	533, 925
SduI	GDGCHC	2 cut(s)	132, 868
SfaNI	GCATC	3 cut(s)	385, 493, 843
SfcI	CTRYAG	1 cut(s)	738
Sfr274I	CTCGAG	1 cut(s)	174
SgrDI	CGTCGACG	1 cut(s)	211
SlaI	CTCGAG	1 cut(s)	174
SmlI	CTYRAG	3 cut(s)	14, 174, 626
SmoI	CTYRAG	3 cut(s)	14, 174, 626
Sse9I	AATT	5 cut(s)	101, 367, 407, 507, 597
SspMI	CTAG	5 cut(s)	647, 780, 807, 929, 939
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	531, 923
TaaI	ACNGT	2 cut(s)	700, 734
TaqI	TCGA	5 cut(s)	134, 175, 212, 249, 281
TasI	AATT	5 cut(s)	101, 367, 407, 507, 597
TauI	GCSGC	4 cut(s)	183, 186, 401, 797
TfiI	GAWTC	3 cut(s)	95, 419, 538
Tru1I	TTAA	3 cut(s)	15, 321, 527
Tru9I	TTAA	3 cut(s)	15, 321, 527
TscAI	CASTG	3 cut(s)	195, 460, 925
TseFI	GTSAC	2 cut(s)	195, 376
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	2 cut(s)	195, 376
TspDTI	ATGAA	3 cut(s)	365, 380, 834
TspRI	CASTG	3 cut(s)	195, 460, 925
Vha464I	CTTAAG	1 cut(s)	14
XapI	RAATTY	2 cut(s)	367, 407
XhoI	CTCGAG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	5 cut(s)	647, 780, 807, 929, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.