Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000182.1

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Reverse (-)

24165 .. 27671

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000182.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgcggagcaagagagggacaatacgcacgcgcatcgcgcgtgcaggaaggctaacaccgctccgaagggcgagagatttgaagaatgagcctcgaggcggcggcgcactgatgtcacttttcttgtcgtcgacgtttgatcaggcttatcatcagctcgcagaaatcgaagcggaactgaaagcagcaatggctggatcgaagaaagtgataacgagggaagagtgggagaagaagcttaatgatgtgaagatcaagaaggaggacatgaataaactggtgatgaatttccttgtgactgagggttatgtggatgcggcggagaaattccgaaaggaatctggaaccgaaccagatattgatcttgcaacaatcactgaccgcatggcggtcaagaaggcggtacaatgtggtaatgtggaggatgcaattgagaaggtgaacgacttaaacccggagattctggacacaaatccccagttatttttccatctccaacagcaaaggttgatagagctaattaggaatggaaaggtagaagaggctcttgagtttgctcaggaagagctagcaccaagaggagaagaaaatcaaagctttttagaagagttggagaggactgttgcacttctagcttttgaagatgtgtccaactgtcctgtaggagagcttttggacatatcacagcgcctaaagacagctagtgaagtgaatgccgccatcctcactagccagagtcatgaaaaagacccaaaacttccaagcttgttgaagatgctcatatgggcccagaaccagcttgatgagaaagctcactatcctcggataaacgatctatccactgccaggctagaagaccctagtgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

289

Amino Acids

32.71

Weight (kDa)

5.41

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	863
AbsI	CCTCGAGG	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	3 cut(s)	31, 38, 40
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	286, 326
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	98, 388, 846
AgsI	TTSAA	3 cut(s)	82, 641, 772
AjnI	CCWGG	1 cut(s)	845
AlwI	GGATC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	1 cut(s)	786
ApaI	GGGCCC	1 cut(s)	790
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	286, 326
AspLEI	GCGC	4 cut(s)	33, 40, 107, 690
AspS9I	GGNCC	2 cut(s)	786, 787
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	292, 451
AsuNHI	GCTAGC	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	790
BanII	GRGCYC	1 cut(s)	790
BbsI	GAAGAC	1 cut(s)	861
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	2 cut(s)	498, 728
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	1 cut(s)	847
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	455
BfaI	CTAG	6 cut(s)	569, 632, 702, 729, 851, 861
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	691
BisI	GCNGC	5 cut(s)	100, 103, 186, 318, 717
BlsI	GCNGC	5 cut(s)	101, 104, 187, 319, 718
Bme1390I	CCNGG	2 cut(s)	455, 847
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	2 cut(s)	786, 787
BmiI	GGNNCC	2 cut(s)	346, 788
BmrFI	CCNGG	2 cut(s)	455, 847
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	4 cut(s)	42, 304, 415, 765
BmtI	GCTAGC	1 cut(s)	572
BmuI	ACTGGG	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	861
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 388, 846
Bse1I	ACTGG	2 cut(s)	282, 478
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	3 cut(s)	319, 430, 720
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	3 cut(s)	98, 388, 846
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	291, 572
BseNI	ACTGG	2 cut(s)	282, 478
BseRI	GAGGAG	1 cut(s)	594
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	3 cut(s)	31, 38, 40
BshFI	GGCC	1 cut(s)	788
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	3 cut(s)	98, 388, 846
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	1 cut(s)	788
BsoBI	CYCGRG	1 cut(s)	93
Bsp120I	GGGCCC	1 cut(s)	786
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp143I	GATC	5 cut(s)	139, 197, 252, 361, 832
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	2 cut(s)	292, 571
BspFNI	CGCG	3 cut(s)	31, 38, 40
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	346, 788
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	558
BsrBI	CCGCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	282, 478
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	5 cut(s)	139, 197, 252, 361, 832
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	2 cut(s)	622, 656
Bst6I	CTCTTC	4 cut(s)	216, 534, 558, 600
BstC8I	GCNNGC	4 cut(s)	29, 42, 159, 570
BstDEI	CTNAG	2 cut(s)	300, 558
BstF5I	GGATG	3 cut(s)	319, 430, 720
BstFNI	CGCG	3 cut(s)	31, 38, 40
BstH2I	RGCGCY	1 cut(s)	691
BstHHI	GCGC	4 cut(s)	33, 40, 107, 690
BstKTI	GATC	5 cut(s)	142, 200, 255, 364, 835
BstMBI	GATC	5 cut(s)	139, 197, 252, 361, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 58, 191, 632
BstNI	CCWGG	1 cut(s)	847
BstSCI	CCNGG	2 cut(s)	453, 845
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	3 cut(s)	31, 38, 40
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	861
BsuRI	GGCC	1 cut(s)	788
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	319, 430, 720
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	3 cut(s)	107, 375, 840
Cac8I	GCNNGC	4 cut(s)	29, 42, 159, 570
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	4 cut(s)	33, 40, 107, 690
Cfr13I	GGNCC	2 cut(s)	786, 787
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	3 cut(s)	268, 385, 740
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	300, 558
DpnI	GATC	5 cut(s)	141, 199, 254, 363, 834
DpnII	GATC	5 cut(s)	139, 197, 252, 361, 832
DrdI	GACNNNNNNGTC	1 cut(s)	863
DseDI	GACNNNNNNGTC	1 cut(s)	863
Eam1104I	CTCTTC	4 cut(s)	216, 534, 558, 600
EarI	CTCTTC	4 cut(s)	216, 534, 558, 600
EciI	GGCGGA	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	790
Eco88I	CYCGRG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	845
EcoT38I	GRGCYC	1 cut(s)	790
FaeI	CATG	3 cut(s)	271, 388, 743
FaiI	YATR	7 cut(s)	269, 309, 386, 680, 741, 782, 784
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	267, 384, 739
FauNDI	CATATG	1 cut(s)	782
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	5 cut(s)	100, 103, 186, 318, 717
FokI	GGATG	3 cut(s)	326, 437, 707
FriOI	GRGCYC	1 cut(s)	790
Fsp4HI	GCNGC	5 cut(s)	100, 103, 186, 318, 717
FspBI	CTAG	6 cut(s)	569, 632, 702, 729, 851, 861
GlaI	GCGC	4 cut(s)	32, 39, 106, 689
GluI	GCNGC	5 cut(s)	100, 103, 186, 318, 717
HaeII	RGCGCY	1 cut(s)	691
HaeIII	GGCC	1 cut(s)	788
HapII	CCGG	1 cut(s)	455
HhaI	GCGC	4 cut(s)	33, 40, 107, 690
Hin1II	CATG	3 cut(s)	271, 388, 743
Hin6I	GCGC	4 cut(s)	31, 38, 105, 688
HinP1I	GCGC	4 cut(s)	31, 38, 105, 688
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HindIII	AAGCTT	3 cut(s)	236, 595, 763
HinfI	GANTC	3 cut(s)	338, 460, 736
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	292, 451
Hpy166II	GTNNAC	2 cut(s)	132, 442
Hpy188I	TCNGA	3 cut(s)	65, 332, 825
Hpy188III	TCNNGA	7 cut(s)	256, 342, 394, 464, 548, 560, 740
Hpy8I	GTNNAC	2 cut(s)	132, 442
Hpy99I	CGWCG	2 cut(s)	133, 136
HpyAV	CCTTC	5 cut(s)	42, 60, 253, 391, 430
HpyCH4III	ACNGT	2 cut(s)	622, 656
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	4 cut(s)	44, 368, 428, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 58, 191, 632
HpyF3I	CTNAG	2 cut(s)	300, 558
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	271, 388, 743
HspAI	GCGC	4 cut(s)	31, 38, 105, 688
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	139, 197, 252, 361, 832
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	2 cut(s)	6, 66
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	4 cut(s)	42, 304, 415, 765
MaeI	CTAG	6 cut(s)	569, 632, 702, 729, 851, 861
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	114, 295
MalI	GATC	5 cut(s)	141, 199, 254, 363, 834
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	5 cut(s)	139, 197, 252, 361, 832
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	790
MluCI	AATT	4 cut(s)	286, 326, 429, 519
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	3 cut(s)	520, 591, 675
MseI	TTAA	2 cut(s)	240, 449
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	455, 847
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	847
MvnI	CGCG	3 cut(s)	31, 38, 40
MwoI	GCNNNNNNNGC	4 cut(s)	37, 58, 191, 632
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	782
NdeII	GATC	5 cut(s)	139, 197, 252, 361, 832
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	3 cut(s)	271, 388, 743
NlaIV	GGNNCC	2 cut(s)	346, 788
NmuCI	GTSAC	2 cut(s)	114, 295
PaeR7I	CTCGAG	1 cut(s)	93
PagI	TCATGA	1 cut(s)	739
PciSI	GCTCTTC	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	718
PfeI	GAWTC	2 cut(s)	338, 460
PkrI	GCNGC	5 cut(s)	101, 104, 187, 319, 718
PleI	GAGTC	1 cut(s)	744
PpsI	GAGTC	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	2 cut(s)	346, 788
PspOMI	GGGCCC	1 cut(s)	786
PspPI	GGNCC	2 cut(s)	786, 787
PspXI	VCTCGAGB	1 cut(s)	93
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	130
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	240, 449
SatI	GCNGC	5 cut(s)	100, 103, 186, 318, 717
Sau3AI	GATC	5 cut(s)	139, 197, 252, 361, 832
Sau96I	GGNCC	2 cut(s)	786, 787
SchI	GAGTC	1 cut(s)	745
ScrFI	CCNGG	2 cut(s)	455, 847
SduI	GDGCHC	1 cut(s)	790
SfaNI	GCATC	4 cut(s)	42, 304, 415, 765
SfcI	CTRYAG	1 cut(s)	660
Sfr274I	CTCGAG	1 cut(s)	93
SgrDI	CGTCGACG	1 cut(s)	130
SlaI	CTCGAG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	93, 548
SmoI	CTYRAG	2 cut(s)	93, 548
Sse9I	AATT	4 cut(s)	286, 326, 429, 519
SspMI	CTAG	6 cut(s)	569, 632, 702, 729, 851, 861
StyD4I	CCNGG	2 cut(s)	453, 845
TaaI	ACNGT	2 cut(s)	622, 656
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	4 cut(s)	94, 131, 168, 200
TasI	AATT	4 cut(s)	286, 326, 429, 519
TauI	GCSGC	4 cut(s)	102, 105, 320, 719
TfiI	GAWTC	2 cut(s)	338, 460
Tru1I	TTAA	2 cut(s)	240, 449
Tru9I	TTAA	2 cut(s)	240, 449
TscAI	CASTG	3 cut(s)	114, 382, 847
TseFI	GTSAC	2 cut(s)	114, 295
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	2 cut(s)	114, 295
TspDTI	ATGAA	3 cut(s)	284, 299, 756
TspRI	CASTG	3 cut(s)	114, 382, 847
XapI	RAATTY	2 cut(s)	286, 326
XhoI	CTCGAG	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	131
XspI	CTAG	6 cut(s)	569, 632, 702, 729, 851, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.