Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Forward (+)

26977106 .. 26979269

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25300.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCCCTGTTCTGGATTGTTGTTCATCAGCTTGCAGAGATCGAAGCAATGGCCGCGTCGAAGAAAGTCATAACGAGGGAAGAGTGGGAGAAGAAGCTCAAGGATGTAAAAATTAGGAAAGAAGACATGAATAAATTGGTGATGAACTTTCTTGTCACTGAGGGTTATGTGGATGCTGCTGAGAAATTCCCAGATATTGATCTTGCAACAATAACGGAACGCATGGCTGTCAAGAAGGCAGTACAATGTGGTAATGTGGAGGATGCGATCGAGAAAGTGAATGACCTAAACCCTGAGATTCTGGATACAAATCCTCAATTATTTTTCCATCTCCAACAGCAAAGGTTGATAGAACTAATTCGGAATGGAAAAGTCGAAGAGGCTCTTGAATTTGCTCAGGAAGAGCTAGCACCAAGGGGAGAAGAAAATCAAAGCTTTTTAGAAGAGTTGGAGAGGACTGTTGCACTGCTAGCTTTTGAAGATGTGAACAACTGTCCCGTTGGAGAGCTTCTCGACATATCACAGCGCCTAAAGACAGCAAGTGAGGTGAATGCAGCCATCCTTACCAGCCAGAGTCATGAAAAAGATCCGAAGCTTCCAAGCTTATTGAAGATGCTGTTATGGGCTCAGAACCAGCTTGATGAAAAAGCCGCTTATCCTCGGATAAACGATCTTTCCACTGCCAAGCTAGAAGACCCTACTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

236

Amino Acids

26.77

Weight (kDa)

4.74

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	701
AccII	CGCG	1 cut(s)	56
AciI	CCGC	2 cut(s)	54, 651
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	185, 389
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	389, 479, 610
AlwI	GGATC	1 cut(s)	581
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	176, 554
ApoI	RAATTY	2 cut(s)	185, 389
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	528
AsuHPI	GGTGA	2 cut(s)	151, 559
AsuNHI	GCTAGC	2 cut(s)	406, 469
BanII	GRGCYC	1 cut(s)	628
BbsI	GAAGAC	2 cut(s)	129, 699
BbvI	GCAGC	2 cut(s)	163, 566
BccI	CCATC	2 cut(s)	336, 566
BciVI	GTATCC	1 cut(s)	298
BfaI	CTAG	4 cut(s)	407, 470, 689, 706
BfoI	RGCGCY	1 cut(s)	529
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	54, 177, 555, 651
BlsI	GCNGC	4 cut(s)	55, 178, 556, 652
BmsI	GCATC	3 cut(s)	163, 253, 603
BmtI	GCTAGC	2 cut(s)	410, 473
BpiI	GAAGAC	2 cut(s)	129, 699
BplI	GAGNNNNNCTC	2 cut(s)	495, 527
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	83
BsaBI	GATNNNNATC	2 cut(s)	198, 309
BsaJI	CCNNGG	2 cut(s)	413, 659
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	2 cut(s)	198, 309
BseDI	CCNNGG	2 cut(s)	413, 659
BseGI	GGATG	4 cut(s)	109, 178, 268, 558
BseJI	GATNNNNATC	2 cut(s)	198, 309
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	5 cut(s)	150, 171, 285, 410, 641
BseXI	GCAGC	2 cut(s)	163, 566
Bsh1236I	CGCG	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	5 cut(s)	39, 199, 267, 586, 670
BspACI	CCGC	2 cut(s)	54, 651
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	5 cut(s)	151, 172, 286, 409, 640
BspFNI	CGCG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	577
BspOI	GCTAGC	2 cut(s)	410, 473
BspPI	GGATC	1 cut(s)	581
BspQI	GCTCTTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	413, 659
BssMI	GATC	5 cut(s)	39, 199, 267, 586, 670
BssT1I	CCWWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	460, 494, 703
Bst6I	CTCTTC	4 cut(s)	75, 372, 396, 438
BstC8I	GCNNGC	3 cut(s)	33, 408, 471
BstDEI	CTNAG	5 cut(s)	159, 180, 294, 396, 627
BstF5I	GGATG	4 cut(s)	109, 178, 268, 558
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	5 cut(s)	42, 202, 270, 589, 673
BstMBI	GATC	5 cut(s)	39, 199, 267, 586, 670
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 470
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	163, 566
BstV2I	GAAGAC	2 cut(s)	129, 699
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	4 cut(s)	109, 178, 268, 558
BtsI	GCAGTG	2 cut(s)	464, 678
BtsIMutI	CAGTG	3 cut(s)	156, 464, 678
Cac8I	GCNNGC	3 cut(s)	33, 408, 471
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	528
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	3 cut(s)	127, 223, 578
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	5 cut(s)	159, 180, 294, 396, 627
DpnI	GATC	5 cut(s)	41, 201, 269, 588, 672
DpnII	GATC	5 cut(s)	39, 199, 267, 586, 670
DrdI	GACNNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	701
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	4 cut(s)	75, 372, 396, 438
EarI	CTCTTC	4 cut(s)	75, 372, 396, 438
Eco130I	CCWWGG	1 cut(s)	413
Eco24I	GRGCYC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	413
EcoT38I	GRGCYC	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	3 cut(s)	130, 226, 581
FaiI	YATR	7 cut(s)	71, 128, 168, 224, 518, 579, 622
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	3 cut(s)	126, 222, 577
Fnu4HI	GCNGC	4 cut(s)	54, 177, 555, 651
FokI	GGATG	4 cut(s)	116, 185, 275, 545
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	4 cut(s)	54, 177, 555, 651
FspBI	CTAG	4 cut(s)	407, 470, 689, 706
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	4 cut(s)	54, 177, 555, 651
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	53
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	3 cut(s)	130, 226, 581
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HindIII	AAGCTT	3 cut(s)	433, 593, 601
HinfI	GANTC	2 cut(s)	298, 574
HphI	GGTGA	2 cut(s)	151, 559
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	4 cut(s)	363, 591, 630, 663
Hpy188III	TCNNGA	8 cut(s)	13, 232, 271, 302, 386, 398, 512, 578
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	3 cut(s)	460, 494, 703
HpyCH4V	TGCA	4 cut(s)	35, 206, 464, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 470
HpyF3I	CTNAG	5 cut(s)	159, 180, 294, 396, 627
Hsp92II	CATG	3 cut(s)	130, 226, 581
HspAI	GCGC	1 cut(s)	526
Kzo9I	GATC	5 cut(s)	39, 199, 267, 586, 670
LguI	GCTCTTC	1 cut(s)	396
LpnPI	CCDG	8 cut(s)	20, 204, 287, 306, 383, 580, 584, 647
Lsp1109I	GCAGC	2 cut(s)	163, 566
LweI	GCATC	3 cut(s)	163, 253, 603
MaeI	CTAG	4 cut(s)	407, 470, 689, 706
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	5 cut(s)	41, 201, 269, 588, 672
MboI	GATC	5 cut(s)	39, 199, 267, 586, 670
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	6 cut(s)	111, 134, 185, 317, 357, 389
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	3 cut(s)	358, 429, 481
MnlI	CCTC	8 cut(s)	69, 154, 253, 324, 373, 447, 538, 669
MroXI	GAANNNNTTC	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	556
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	53, 470
NdeII	GATC	5 cut(s)	39, 199, 267, 586, 670
NheI	GCTAGC	2 cut(s)	406, 469
NlaIII	CATG	3 cut(s)	130, 226, 581
NmuCI	GTSAC	1 cut(s)	154
PagI	TCATGA	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	396
PctI	GAATGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	4 cut(s)	55, 178, 556, 652
Ple19I	CGATCG	1 cut(s)	270
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	586
PvuI	CGATCG	1 cut(s)	270
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	4 cut(s)	54, 177, 555, 651
Sau3AI	GATC	5 cut(s)	39, 199, 267, 586, 670
SchI	GAGTC	1 cut(s)	583
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	3 cut(s)	163, 253, 603
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	6 cut(s)	111, 134, 185, 317, 357, 389
SsiI	CCGC	2 cut(s)	54, 651
SspMI	CTAG	4 cut(s)	407, 470, 689, 706
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	3 cut(s)	460, 494, 703
TaqI	TCGA	5 cut(s)	42, 59, 270, 375, 513
TasI	AATT	6 cut(s)	111, 134, 185, 317, 357, 389
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	2 cut(s)	56, 653
TfiI	GAWTC	1 cut(s)	298
TscAI	CASTG	3 cut(s)	163, 471, 685
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	176, 554
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	14, 143, 158, 594, 657
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	3 cut(s)	163, 471, 685
XapI	RAATTY	2 cut(s)	185, 389
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	4 cut(s)	407, 470, 689, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.