Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003571

Physical Location & Seq

Genomic Coordinates Forward (+)

5713455 .. 5716644

Gene Structure 3190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCACTTTTCTTGTCGTCGACGTTTGATCAGGCTTATCATCAGCTCGCAGAAATCGAAGCGGAACTGAAAGCAGCAATGGCTGGATCGAAGAAAGTGATAACGAGGGAAGAGTGGGAGAAGAAGCTCAATGATGTGAAGATCAAGAAGGAGGACATGAATAAACTGGTGATGAATTTCCTTGTGACTGAGGGTTATGTGGATGCCGCGGAGAAATTCCGAAAGGAATCTGGAACCGAACCAGATATTGATCTTGCAACAATCACTGACCGCATGGCGGTCAAGAAGGCGGTACAATGTGGTAATGTGGAGGATGCAATTGAGAAGGTGAACGACTTAAACCCGGAGATTCTGGACACAAATCCCCAGTTATTTTTCCATCTCCAACAGCAAAGGTTGATAGAGCTAATTAGGAATGGAAAGGTAGAAGAGGCTCTTGAGTTTGCTCAGGAAGAGCTAGCACCAAGAGGAGAAGAAAATCAAAGCTTTTTAGAAGAGTTGGAGAGGACTGTTGCACTTCTAGCTTTTGAAGATGTGTCCAACTGTCCTGTAGGAGAGCTTTTGGACATATCACAGCGCCTAAAGACAGCTAGTGAAGTGAATGCCGCCATCCTCACTAGCCAGAGTCATGAAAAAGACCCAAAACTTCCAAGCTTGTTGAAGATGCTCATATGGGCCCAGAACCAGCTTGATGAGAAAGCTCACTATCCTCGGATAAACGATCTATCCACTGCCAGGCTAGAAGACCCTAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH LisH

Protein Analysis

252

Amino Acids

28.57

Weight (kDa)

4.74

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	51 - 77	3.2e-09	LisH
CTLH	PF10607	88 - 230	3e-38	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150 AT1G61150
fragaria_vesca	FvH4_3g04570 FvH4_3g04570 FvH4_3g04570 FvH4_6g14210
malus_domestica	MD05G1322300.v1.1 MD10G1300300.v1.1
prunus_persica	Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1 Prupe.4G040500_v2.0.a1
pyrus_communis	pycom05g29660 pycom10g25300
rosa_chinensis	RchiOBHm_Chr5g0007491
rosa_laevigata	RLG00000031461
rosa_multiflora	Rmu_co8051752.1_g000001 Rmu_ssc0000182.1_g000006
rosa_roxburghii	Rroxscaffold_1G00068900
rosa_rugosa	Rorug04G0427200 Rorug04G0427300 Rorug04G0427400 Rorug04G0427600
rosa_samantha	Rh5AG055600 Rh5CG063000 Rh5DG052300
rosa_wichuraiana	Rw5G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	1 cut(s)	209
AciI	CCGC	7 cut(s)	62, 207, 209, 271, 278, 290, 606
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	175, 215
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	277, 735
AgsI	TTSAA	2 cut(s)	530, 661
AjnI	CCWGG	1 cut(s)	734
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	675
ApaI	GGGCCC	1 cut(s)	679
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	175, 215
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	675, 676
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	181, 340
AsuNHI	GCTAGC	1 cut(s)	457
BaeGI	GKGCMC	1 cut(s)	679
BanII	GRGCYC	1 cut(s)	679
BbsI	GAAGAC	1 cut(s)	750
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	387, 617
BciT130I	CCWGG	1 cut(s)	736
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	6 cut(s)	458, 521, 591, 618, 740, 750
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	580
BisI	GCNGC	3 cut(s)	75, 207, 606
BlsI	GCNGC	3 cut(s)	76, 208, 607
Bme1390I	CCNGG	2 cut(s)	344, 736
BmgT120I	GGNCC	2 cut(s)	675, 676
BmiI	GGNNCC	2 cut(s)	235, 677
BmrFI	CCNGG	2 cut(s)	344, 736
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	3 cut(s)	193, 304, 654
BmtI	GCTAGC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	207, 710
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 735
Bse1I	ACTGG	2 cut(s)	171, 367
Bse3DI	GCAATG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	736
BseDI	CCNNGG	2 cut(s)	207, 710
BseGI	GGATG	3 cut(s)	208, 319, 609
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	277, 735
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	180, 461
BseNI	ACTGG	2 cut(s)	171, 367
BseRI	GAGGAG	1 cut(s)	483
BseSI	GKGCMC	1 cut(s)	679
BseXI	GCAGC	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	677
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	277, 735
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	1 cut(s)	677
Bsp120I	GGGCCC	1 cut(s)	675
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	5 cut(s)	28, 86, 141, 250, 721
BspACI	CCGC	7 cut(s)	62, 207, 209, 271, 278, 290, 606
BspANI	GGCC	1 cut(s)	677
BspCNI	CTCAG	2 cut(s)	181, 460
BspFNI	CGCG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	235, 677
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	171, 367
BssECI	CCNNGG	2 cut(s)	207, 710
BssMI	GATC	5 cut(s)	28, 86, 141, 250, 721
Bst2UI	CCWGG	1 cut(s)	736
Bst4CI	ACNGT	2 cut(s)	511, 545
Bst6I	CTCTTC	4 cut(s)	105, 423, 447, 489
BstC8I	GCNNGC	2 cut(s)	48, 459
BstDEI	CTNAG	2 cut(s)	189, 447
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	3 cut(s)	208, 319, 609
BstFNI	CGCG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	5 cut(s)	31, 89, 144, 253, 724
BstMBI	GATC	5 cut(s)	28, 86, 141, 250, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 521
BstNI	CCWGG	1 cut(s)	736
BstSCI	CCNGG	2 cut(s)	342, 734
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	679
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	750
BsuRI	GGCC	1 cut(s)	677
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	208, 319, 609
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	2 cut(s)	264, 729
Cac8I	GCNNGC	2 cut(s)	48, 459
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	2 cut(s)	675, 676
Cfr42I	CCGCGG	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	157, 274, 629
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	189, 447
DpnI	GATC	5 cut(s)	30, 88, 143, 252, 723
DpnII	GATC	5 cut(s)	28, 86, 141, 250, 721
DrdI	GACNNNNNNGTC	1 cut(s)	752
DseDI	GACNNNNNNGTC	1 cut(s)	752
Eam1104I	CTCTTC	4 cut(s)	105, 423, 447, 489
EarI	CTCTTC	4 cut(s)	105, 423, 447, 489
Eco24I	GRGCYC	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	679
FaeI	CATG	3 cut(s)	160, 277, 632
FaiI	YATR	7 cut(s)	158, 198, 275, 569, 630, 671, 673
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	3 cut(s)	156, 273, 628
FauNDI	CATATG	1 cut(s)	671
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	75, 207, 606
FokI	GGATG	3 cut(s)	215, 326, 596
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	3 cut(s)	75, 207, 606
FspBI	CTAG	6 cut(s)	458, 521, 591, 618, 740, 750
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	3 cut(s)	75, 207, 606
HaeII	RGCGCY	1 cut(s)	580
HaeIII	GGCC	1 cut(s)	677
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	3 cut(s)	160, 277, 632
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	2 cut(s)	484, 652
HinfI	GANTC	3 cut(s)	227, 349, 625
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	181, 340
Hpy166II	GTNNAC	2 cut(s)	21, 331
Hpy188I	TCNGA	2 cut(s)	221, 714
Hpy188III	TCNNGA	7 cut(s)	145, 231, 283, 353, 437, 449, 629
Hpy8I	GTNNAC	2 cut(s)	21, 331
Hpy99I	CGWCG	2 cut(s)	22, 25
HpyAV	CCTTC	3 cut(s)	142, 280, 319
HpyCH4III	ACNGT	2 cut(s)	511, 545
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	257, 317, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 521
HpyF3I	CTNAG	2 cut(s)	189, 447
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	160, 277, 632
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	5 cut(s)	28, 86, 141, 250, 721
LguI	GCTCTTC	1 cut(s)	447
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	3 cut(s)	193, 304, 654
MaeI	CTAG	6 cut(s)	458, 521, 591, 618, 740, 750
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	3, 184
MalI	GATC	5 cut(s)	30, 88, 143, 252, 723
MboI	GATC	5 cut(s)	28, 86, 141, 250, 721
MfeI	CAATTG	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	4 cut(s)	175, 215, 318, 408
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	3 cut(s)	409, 480, 564
MnlI	CCTC	9 cut(s)	99, 145, 184, 304, 424, 461, 498, 623, 720
MseI	TTAA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	344, 736
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	736
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	80, 521
NciI	CCSGG	1 cut(s)	344
NdeI	CATATG	1 cut(s)	671
NdeII	GATC	5 cut(s)	28, 86, 141, 250, 721
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	160, 277, 632
NlaIV	GGNNCC	2 cut(s)	235, 677
NmuCI	GTSAC	2 cut(s)	3, 184
PagI	TCATGA	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	227, 349
PkrI	GCNGC	3 cut(s)	76, 208, 607
PleI	GAGTC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	734
PspN4I	GGNNCC	2 cut(s)	235, 677
PspOMI	GGGCCC	1 cut(s)	675
PspPI	GGNCC	2 cut(s)	675, 676
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SacII	CCGCGG	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	3 cut(s)	75, 207, 606
Sau3AI	GATC	5 cut(s)	28, 86, 141, 250, 721
Sau96I	GGNCC	2 cut(s)	675, 676
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	2 cut(s)	344, 736
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	3 cut(s)	193, 304, 654
SfcI	CTRYAG	1 cut(s)	549
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SgrDI	CGTCGACG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	175, 215, 318, 408
SsiI	CCGC	7 cut(s)	62, 207, 209, 271, 278, 290, 606
SspMI	CTAG	6 cut(s)	458, 521, 591, 618, 740, 750
StyD4I	CCNGG	2 cut(s)	342, 734
TaaI	ACNGT	2 cut(s)	511, 545
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	20, 57, 89
TasI	AATT	4 cut(s)	175, 215, 318, 408
TauI	GCSGC	2 cut(s)	209, 608
TfiI	GAWTC	2 cut(s)	227, 349
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	2 cut(s)	271, 736
TseFI	GTSAC	2 cut(s)	3, 184
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	3, 184
TspDTI	ATGAA	3 cut(s)	173, 188, 645
TspRI	CASTG	2 cut(s)	271, 736
XapI	RAATTY	2 cut(s)	175, 215
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	6 cut(s)	458, 521, 591, 618, 740, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.