RchiOBHm_Chr5g0009561

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030237
Physical Location & Seq
Forward (+)
6335727 .. 6336279
553 bp
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UTR
Exon/CDS
Intron
PRQ29043

Sequence Viewer

Length: 351 bp
ATGGACAAGCCGGTCACTCTTGCAGGGCCAGTGGTGCCAGATGCCCCAAGTTCACAGTTGGAAGAGAAATGGGAAAAATGGCTTGGAGGGTTCGAACCCAAAACGGTGATTTTCTGTGCTTTTGGCAGTGAATGCATTCTGAAAAATGAACAGTTCCAAGAACTGTTACTTGGTTTTGAGCTAACTGGTTTGCCATTCTTCGCTGCCCTGAAACCGCCGGCCGGAGTTGAATCAATTGAATCGGCACTACCAGAAGGCTTTGAATTGCGTCTAAAAGGAAAAGGGGTGGTTTATGGGGGTTGGGTTCAGCAGCCTTTGATACTGAGCACCCATCTGTGGGTTGCTTTGTGA

Protein Analysis

116

Amino Acids

12.71

Weight (kDa)

4.8

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030237)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0009561 RchiOBHm_Chr5g0009621

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 219
AfiI CCNNNNNNNGG 3 cut(s) 221, 336, 337
AgsI TTSAA 3 cut(s) 230, 239, 263
AjuI GAANNNNNNNTTGG 4 cut(s) 66, 98, 153, 185
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 329
AoxI GGCC 2 cut(s) 26, 219
ApeKI GCWGC 2 cut(s) 203, 310
Asp700I GAANNNNTTC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 93
BanI GGYRCC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 190, 322
BccI CCATC 1 cut(s) 339
BisI GCNGC 2 cut(s) 204, 311
BlsI GCNGC 2 cut(s) 205, 312
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 93
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 336, 337
Bse118I RCCGGY 2 cut(s) 10, 217
Bse1I ACTGG 2 cut(s) 29, 190
BseLI CCNNNNNNNGG 3 cut(s) 221, 336, 337
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 2 cut(s) 29, 190
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 190, 322
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 28, 221
BshNI GGYRCC 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 3 cut(s) 11, 218, 222
BslI CCNNNNNNNGG 3 cut(s) 221, 336, 337
BsmI GAATGC 2 cut(s) 135, 137
BsnI GGCC 2 cut(s) 28, 221
Bsp119I TTCGAA 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 329
BspACI CCGC 1 cut(s) 215
BspANI GGCC 2 cut(s) 28, 221
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 34
BsrFI RCCGGY 2 cut(s) 10, 217
BsrI ACTGG 2 cut(s) 29, 190
BssAI RCCGGY 2 cut(s) 10, 217
Bst4CI ACNGT 4 cut(s) 57, 106, 153, 165
Bst6I CTCTTC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 323
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 34, 132
BstV1I GCAGC 2 cut(s) 190, 322
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 2 cut(s) 28, 221
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 36, 133
Cac8I GCNNGC 1 cut(s) 219
Cfr10I RCCGGY 2 cut(s) 10, 217
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 257
CviJI RGCY 7 cut(s) 10, 28, 82, 181, 221, 258, 313
CviKI_1 RGCY 7 cut(s) 10, 28, 82, 181, 221, 258, 313
DdeI CTNAG 1 cut(s) 323
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 219
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 219
Eco52I CGGCCG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 137
FaiI YATR 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 204, 311
Fsp4HI GCNGC 2 cut(s) 204, 311
GluI GCNGC 2 cut(s) 204, 311
HaeIII GGCC 2 cut(s) 28, 221
HapII CCGG 3 cut(s) 11, 218, 222
HgaI GACGC 1 cut(s) 257
HinfI GANTC 2 cut(s) 230, 239
HpaII CCGG 3 cut(s) 11, 218, 222
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 4 cut(s) 57, 106, 153, 165
HpyCH4V TGCA 2 cut(s) 23, 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 132
HpyF3I CTNAG 1 cut(s) 323
KroI GCCGGC 1 cut(s) 217
KroNI GCCGGC 1 cut(s) 219
LpnPI CCDG 9 cut(s) 9, 24, 42, 51, 171, 221, 231, 235, 264
Lsp1109I GCAGC 2 cut(s) 190, 322
LweI GCATC 1 cut(s) 31
MaeIII GTNAC 2 cut(s) 13, 165
MboII GAAGA 2 cut(s) 74, 190
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 2 cut(s) 234, 263
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 135
MspI CCGG 3 cut(s) 11, 218, 222
MunI CAATTG 1 cut(s) 234
Mva1269I GAATGC 2 cut(s) 135, 137
MwoI GCNNNNNNNGC 2 cut(s) 34, 132
NaeI GCCGGC 1 cut(s) 219
NgoMIV GCCGGC 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 137
NspV TTCGAA 1 cut(s) 93
PctI GAATGC 2 cut(s) 135, 137
PdiI GCCGGC 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 230, 239
PkrI GCNGC 2 cut(s) 205, 312
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 26
SatI GCNGC 2 cut(s) 204, 311
Sau96I GGNCC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 329
SetI ASST 1 cut(s) 183
SfaNI GCATC 1 cut(s) 31
SfuI TTCGAA 1 cut(s) 93
Sse9I AATT 2 cut(s) 234, 263
SsiI CCGC 1 cut(s) 215
TaaI ACNGT 4 cut(s) 57, 106, 153, 165
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 234, 263
TfiI GAWTC 2 cut(s) 230, 239
TscAI CASTG 2 cut(s) 36, 133
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 203, 310
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 2 cut(s) 36, 133
XmnI GAANNNNTTC 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.