Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030237

Physical Location & Seq

Genomic Coordinates Forward (+)

6388580 .. 6389062

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAGCTGATCGTTCCTCCTCATATTAAGTTACGAACTCACGAAGCTCGAGCTTTTGATCCCATGGCAAACATGGAATATGGTAGTGGTGTGAATTCGCCAAACGCCACTGTACCTCTTTCAGCAATTGTGATGCAATTTTGTTTCCAAACTTGCAAAGAATTCATAGGGCCATTTTGTAACTATATAGAAATACAAATGAACAGGCTGGTCATTCTTGCAGGGCCAGTGGTGCCAGATCCGCCAAGTTCACAGTTGGAAGAGAAATGGGCAAAATGGCTTAGAGGGTTCGAACCTAGAACAGTGATTTTCTGTACTTTTGGCAGTGAATGCGTTTTGAAGAAGGAACAGTTCCAAGAGTTGTTACTTGGTTTTGAGCTAACTGGTTTGCCATTCTTCTCTGTCCTGAAACCGCCAGCAGGAGTTGAATTAATTGACTCGGTACTGCCAGAAGGCTTTGAAGAGCGTGTAAAAGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

160

Amino Acids

17.99

Weight (kDa)

5.74

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030237)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0009561 RchiOBHm_Chr5g0009621

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AciI	CCGC	2 cut(s)	242, 413
AclWI	GGATC	2 cut(s)	53, 233
AcsI	RAATTY	2 cut(s)	94, 161
AfaI	GTAC	3 cut(s)	114, 316, 444
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	3 cut(s)	340, 428, 461
AluBI	AGCT	4 cut(s)	7, 47, 53, 379
AluI	AGCT	4 cut(s)	7, 47, 53, 379
AlwI	GGATC	2 cut(s)	53, 233
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	2 cut(s)	170, 224
ApoI	RAATTY	2 cut(s)	94, 161
AseI	ATTAAT	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	170, 224
AsuII	TTCGAA	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	170, 224
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	227, 388
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	227, 388
BseRI	GAGGAG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	172, 226
BshNI	GGYRCC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	172, 226
BsoBI	CYCGRG	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	9, 58, 238
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	2 cut(s)	242, 413
BspANI	GGCC	2 cut(s)	172, 226
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	53, 233
BspQI	GCTCTTC	1 cut(s)	456
BspT104I	TTCGAA	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	227, 388
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	9, 58, 238
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	4 cut(s)	112, 255, 304, 351
Bst6I	CTCTTC	2 cut(s)	255, 456
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	63
BstKTI	GATC	3 cut(s)	12, 61, 241
BstMBI	GATC	3 cut(s)	9, 58, 238
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 241, 330
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	172, 226
BtgI	CCRYGG	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	4 cut(s)	108, 234, 309, 331
Cac8I	GCNNGC	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	170, 224
Csp6I	GTAC	3 cut(s)	113, 315, 443
CviAII	CATG	2 cut(s)	64, 73
CviJI	RGCY	9 cut(s)	7, 47, 53, 172, 208, 226, 280, 379, 456
CviKI_1	RGCY	9 cut(s)	7, 47, 53, 172, 208, 226, 280, 379, 456
CviQI	GTAC	3 cut(s)	113, 315, 443
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	3 cut(s)	11, 60, 240
DpnII	GATC	3 cut(s)	9, 58, 238
Eam1104I	CTCTTC	2 cut(s)	255, 456
EarI	CTCTTC	2 cut(s)	255, 456
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	48
EcoRI	GAATTC	2 cut(s)	94, 161
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	67, 76
FaiI	YATR	7 cut(s)	24, 65, 74, 81, 167, 186, 188
FatI	CATG	2 cut(s)	63, 72
FspBI	CTAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	172, 226
Hin1II	CATG	2 cut(s)	67, 76
HinfI	GANTC	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188III	TCNNGA	2 cut(s)	41, 406
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	337, 446
HpyCH4III	ACNGT	4 cut(s)	112, 255, 304, 351
HpyCH4V	TGCA	3 cut(s)	136, 156, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 241, 330
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	67, 76
Kzo9I	GATC	3 cut(s)	9, 58, 238
LguI	GCTCTTC	1 cut(s)	456
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	30, 179, 363
MalI	GATC	3 cut(s)	11, 60, 240
MboI	GATC	3 cut(s)	9, 58, 238
MboII	GAAGA	4 cut(s)	272, 352, 388, 473
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	6 cut(s)	94, 126, 137, 161, 428, 432
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	27, 30, 126, 278
MseI	TTAA	2 cut(s)	27, 431
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	232, 241, 330
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	3 cut(s)	9, 58, 238
NlaIII	CATG	2 cut(s)	67, 76
NlaIV	GGNNCC	1 cut(s)	234
NspV	TTCGAA	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	48
PciSI	GCTCTTC	1 cut(s)	456
PctI	GAATGC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PshBI	ATTAAT	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	170, 224
PspXI	VCTCGAGB	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	3 cut(s)	114, 316, 444
RsaNI	GTAC	3 cut(s)	113, 315, 443
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	27, 431
Sau3AI	GATC	3 cut(s)	9, 58, 238
Sau96I	GGNCC	2 cut(s)	170, 224
SchI	GAGTC	1 cut(s)	431
SetI	ASST	6 cut(s)	9, 49, 55, 118, 298, 381
SfaNI	GCATC	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	291
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	6 cut(s)	94, 126, 137, 161, 428, 432
SsiI	CCGC	2 cut(s)	242, 413
SspMI	CTAG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	4 cut(s)	112, 255, 304, 351
TaqI	TCGA	2 cut(s)	49, 291
TasI	AATT	6 cut(s)	94, 126, 137, 161, 428, 432
TatI	WGTACW	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	27, 431
Tru9I	TTAA	2 cut(s)	27, 431
TscAI	CASTG	4 cut(s)	115, 234, 309, 331
TspDTI	ATGAA	3 cut(s)	17, 154, 215
TspRI	CASTG	4 cut(s)	115, 234, 309, 331
VspI	ATTAAT	1 cut(s)	431
XapI	RAATTY	2 cut(s)	94, 161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	48
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.