RchiOBHm_Chr5g0013621

threonine-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
9152330 .. 9161327
8998 bp
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UTR
Exon/CDS
Intron
PRQ29414

Sequence Viewer

Length: 1047 bp
ATGAGATGGGCAGTTTTGATGGCTGATACCAAACCAGATTTGGAGAAACAGGAAAAGGGTACGACGAACGTGGTCCTTCCTCTAGATGAAGGAATTCTCATTGGGACTTGTTCAAGATTAACCAGTGAGAAGGGTTATATAGTTACAGATACGTCAACAAAGTTCAAGATTTTGACATCTACTGTAGGAGTAGTAGTGTCGGGTTTTATGGGTAGAGCTGACAATGTTTGGGAGCATTTAATAAATTGGGTCAAAGGTGAGGTGGAACCTACCGTATATAGGGTAGCAAGTGCTGCTCATCAGTATATGGATATTCACAGGTCAAAGGGCCGGTATAATGCTACATTTATATTTATTGGACATGATTATGCAGACAATCATCTGGTGCCTTACATATTTAGGGTTGAAGATCTGGCTGCTCCACCTGATGAAGTTAGCAAAGGTGTTAGTTTTGTTATGGATTGTGAAAAAATAATTGTAGCTGGGTCGGGCGGTGGATGGGCATTGACCAAATTAAATAGTTGTTGGAGGGAGAACATGAATGTTGAGGTTGCATATCATGTTATCAAGTCATCTTTGTTAGAGTCTGCGCTTAAAGAGAAGGACACGGGGGGTATTTTCAGATTTTTTTTTATGAGCCCACGATTGCGTACTCTACGTGCTTCCCATGTGTGTGACTCATATATGGAAAAATTTGAAGAATACCATGAGTCTAATCAGAGGGCTATTTTCATATTGTGTTGTGATATTGGAAATGCTACTCATTTCTCCTACACATTCAGGCATTATGGTAAAGTTGAGCATAACCAATGCCTTTTTGAGGTTGACAGAGTTAGTTTTCACAGAATAGAGTTTCAAAATGCACAATCTGTTGATTCGGCAATCAAAGATTCTAAAACTGGACAGTCGATAGAAGAGCCATTCTGCCACTTTCGGACTATTCAACTTATAGCATCAGATGGCTTTGTTGGTGAGGTTTTTATCAGTATGGCTTCACAATTGATATTAGGAAAAGTTATGGAACATTGGAAGTATGTTGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

39.5

Weight (kDa)

6.06

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030248)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0013621
rosa_samantha Rh5CG114100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 385
AciI CCGC 1 cut(s) 492
AcsI RAATTY 2 cut(s) 93, 692
AfaI GTAC 2 cut(s) 61, 652
AfiI CCNNNNNNNGG 2 cut(s) 279, 820
AgsI TTSAA 6 cut(s) 114, 166, 407, 698, 857, 944
AluBI AGCT 2 cut(s) 218, 482
AluI AGCT 2 cut(s) 218, 482
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 293, 416
ApoI RAATTY 2 cut(s) 93, 692
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 2 cut(s) 73, 328
AsuHPI GGTGA 2 cut(s) 269, 983
AvaII GGWCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 385
BanII GRGCYC 1 cut(s) 641
BbvI GCAGC 2 cut(s) 280, 403
BccI CCATC 3 cut(s) 13, 492, 953
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 183
BglII AGATCT 1 cut(s) 409
BisI GCNGC 2 cut(s) 294, 417
BlsI GCNGC 2 cut(s) 295, 418
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 73, 328
BmiI GGNNCC 2 cut(s) 267, 387
BmsI GCATC 1 cut(s) 962
BsaAI YACGTR 1 cut(s) 659
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 820
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 2 cut(s) 123, 904
BseGI GGATG 1 cut(s) 503
BseLI CCNNNNNNNGG 2 cut(s) 279, 820
BseNI ACTGG 2 cut(s) 123, 904
BseXI GCAGC 2 cut(s) 280, 403
BseYI CCCAGC 1 cut(s) 482
BshFI GGCC 1 cut(s) 330
BshNI GGYRCC 1 cut(s) 385
BsiSI CCGG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 279, 820
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 641
Bsp143I GATC 1 cut(s) 409
BspACI CCGC 1 cut(s) 492
BspANI GGCC 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 267, 387
BspQI GCTCTTC 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 330
BsrI ACTGG 2 cut(s) 123, 904
BssAI RCCGGY 1 cut(s) 330
BssMI GATC 1 cut(s) 409
Bst4CI ACNGT 3 cut(s) 184, 274, 906
Bst6I CTCTTC 1 cut(s) 909
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 659
BstENI CCTNNNNNAGG 1 cut(s) 818
BstF5I GGATG 1 cut(s) 503
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 280, 403
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 1 cut(s) 503
BtsIMutI CAGTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 73, 328
Csp6I GTAC 2 cut(s) 60, 651
CviAII CATG 5 cut(s) 362, 538, 560, 668, 707
CviQI GTAC 2 cut(s) 60, 651
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco24I GRGCYC 1 cut(s) 641
Eco47I GGWCC 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoRI GAATTC 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 641
FaeI CATG 5 cut(s) 365, 541, 563, 671, 710
FaqI GGGAC 1 cut(s) 118
FatI CATG 5 cut(s) 361, 537, 559, 667, 706
Fnu4HI GCNGC 2 cut(s) 294, 417
FokI GGATG 1 cut(s) 510
FriOI GRGCYC 1 cut(s) 641
Fsp4HI GCNGC 2 cut(s) 294, 417
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 591
GluI GCNGC 2 cut(s) 294, 417
GsaI CCCAGC 1 cut(s) 486
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 331
HhaI GCGC 1 cut(s) 592
Hin1II CATG 5 cut(s) 365, 541, 563, 671, 710
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 2 cut(s) 156, 826
HindII GTYRAC 2 cut(s) 156, 826
HinfI GANTC 5 cut(s) 584, 677, 710, 875, 890
HpaII CCGG 1 cut(s) 331
HphI GGTGA 2 cut(s) 269, 983
Hpy166II GTNNAC 2 cut(s) 156, 826
Hpy188I TCNGA 4 cut(s) 623, 720, 936, 958
Hpy188III TCNNGA 3 cut(s) 83, 114, 166
Hpy8I GTNNAC 2 cut(s) 156, 826
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 83, 86, 124, 595
HpyCH4III ACNGT 3 cut(s) 184, 274, 906
HpyCH4IV ACGT 3 cut(s) 69, 152, 658
HpyCH4V TGCA 3 cut(s) 371, 554, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpySE526I ACGT 3 cut(s) 69, 152, 658
Hsp92II CATG 5 cut(s) 365, 541, 563, 671, 710
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 1 cut(s) 409
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 2 cut(s) 232, 424
Lsp1109I GCAGC 2 cut(s) 280, 403
LweI GCATC 1 cut(s) 962
MaeI CTAG 1 cut(s) 83
MaeII ACGT 3 cut(s) 69, 152, 658
MaeIII GTNAC 2 cut(s) 142, 674
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 3 cut(s) 419, 710, 926
MfeI CAATTG 1 cut(s) 998
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 641
MluCI AATT 6 cut(s) 93, 244, 474, 512, 692, 998
MlyI GAGTC 3 cut(s) 593, 671, 719
MmeI TCCRAC 1 cut(s) 506
MnlI CCTC 8 cut(s) 90, 253, 522, 541, 714, 814, 967, 1033
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 4 cut(s) 119, 239, 515, 594
MslI CAYNNNNRTG 2 cut(s) 366, 672
MspI CCGG 1 cut(s) 331
MunI CAATTG 1 cut(s) 998
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 409
NlaIII CATG 5 cut(s) 365, 541, 563, 671, 710
NlaIV GGNNCC 2 cut(s) 267, 387
NmuCI GTSAC 1 cut(s) 674
PciSI GCTCTTC 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 875, 890
PkrI GCNGC 2 cut(s) 295, 418
PleI GAGTC 3 cut(s) 592, 671, 718
PpsI GAGTC 3 cut(s) 592, 671, 718
Ppu21I YACGTR 1 cut(s) 659
PspFI CCCAGC 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 267, 387
PspPI GGNCC 2 cut(s) 73, 328
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 2 cut(s) 61, 652
RsaNI GTAC 2 cut(s) 60, 651
RseI CAYNNNNRTG 2 cut(s) 366, 672
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 4 cut(s) 119, 239, 515, 594
SatI GCNGC 2 cut(s) 294, 417
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 2 cut(s) 73, 328
SchI GAGTC 3 cut(s) 593, 671, 719
SduI GDGCHC 1 cut(s) 641
SfaNI GCATC 1 cut(s) 962
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 366, 672
Sse9I AATT 6 cut(s) 93, 244, 474, 512, 692, 998
SsiI CCGC 1 cut(s) 492
SspMI CTAG 1 cut(s) 83
TaaI ACNGT 3 cut(s) 184, 274, 906
TaiI ACGT 3 cut(s) 72, 155, 661
TaqI TCGA 1 cut(s) 908
TasI AATT 6 cut(s) 93, 244, 474, 512, 692, 998
TfiI GAWTC 2 cut(s) 875, 890
Tru1I TTAA 4 cut(s) 119, 239, 515, 594
Tru9I TTAA 4 cut(s) 119, 239, 515, 594
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 2 cut(s) 293, 416
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 4 cut(s) 102, 444, 554, 721
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 73
XagI CCTNNNNNAGG 1 cut(s) 818
XapI RAATTY 2 cut(s) 93, 692
XbaI TCTAGA 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.