Rh5CG114100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
9328001 .. 9331271
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG114100.1

Sequence Viewer

Length: 1020 bp
ATGAATGAGTTACAGGAGAAACAGGAAAAGGGTACGACGAACGTGGTCCTTCCTCTAGATGAAGGAATTCTCATTGGGACTTGTTCAAGATTAACCAGTGAGAAGGGTTATATAGTTACAGATACGTCAACAAAGTTCAAGATTTTGACATCTACTGTAGGAGTAGTAGTGTCGGGTTTTATGGGTAGAGCTGACAATGTTTGGGAGCATTTAATAAATTGGGTCAAAGGTGAGGTGGAACCTACCGTATATAGGGTAGCAAGTGCTGCTCATCAGTATATGGATATTCACAGGTCAAAGGGCCGGTATAATGCTACATTTATATTTATTGGACATGATTATGCAGACAATCATCTGGTGCCTTACATATTTAGGGTTGAAGATCTGGCTGCTCCACCTGATGAAGTTAGCAAAGGTGTTAGTTTTGTTATGGATTGTGAAAAAATAATTGTAGCTGGGTCGGGCGGTGGATGGGCATTGACCAAATTAAATAGTTGTTGGAGGGAGAACATGAATGTTGAGGTTGCATATCATGTTATCAAGTCATCTTTGTTAGAGTCTGCGCTTAAAGAGAAGGACACGGGGGGTATTTTCAGATTTTTTTTTATGAGCCCACGATTGCGTACTCTACGTGCTTCCCATGTGTGTGACTCATATATGGAAAAATTTGAAGAATACCATGAGTCTAATCAGAGGGCTATTTTCATATTGTGTTGTGATATTGGAAATGCTACTCATTTCTCCTACACATTCAGGCATTATGGTAAAGTTGAGCATAACCAATGCCTTTTTGAGGTTGACAGAGTTAGTTTTCACAGAATAGAGTTTCAAAATGCACAATCTGTTGATTCGGCAATCAAAGATTCTAAAACTGGACAGTCGATAGAAGAGCCATTCTGCCACTTTCGGACTATTCAACTTATAGCATCAGATGGCTTTGTTGGTGAGGTTTTTATCAGTATGGCTTCACAATTGATATTAGGAAAAGTTATGGAACATTGGAAGTATGTTGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

38.49

Weight (kDa)

5.97

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030248)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0013621
rosa_samantha Rh5CG114100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AciI CCGC 1 cut(s) 465
AcsI RAATTY 2 cut(s) 66, 665
AfaI GTAC 2 cut(s) 34, 625
AfiI CCNNNNNNNGG 2 cut(s) 252, 793
AgsI TTSAA 6 cut(s) 87, 139, 380, 671, 830, 917
AluBI AGCT 2 cut(s) 191, 455
AluI AGCT 2 cut(s) 191, 455
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 266, 389
ApoI RAATTY 2 cut(s) 66, 665
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 565
AspS9I GGNCC 2 cut(s) 46, 301
AsuHPI GGTGA 2 cut(s) 242, 956
AvaII GGWCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 614
BbvI GCAGC 2 cut(s) 253, 376
BccI CCATC 2 cut(s) 465, 926
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 156
BglII AGATCT 1 cut(s) 382
BisI GCNGC 2 cut(s) 267, 390
BlsI GCNGC 2 cut(s) 268, 391
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 46, 301
BmiI GGNNCC 2 cut(s) 240, 360
BmsI GCATC 1 cut(s) 935
BsaAI YACGTR 1 cut(s) 632
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 793
Bse118I RCCGGY 1 cut(s) 303
Bse1I ACTGG 2 cut(s) 96, 877
BseGI GGATG 1 cut(s) 476
BseLI CCNNNNNNNGG 2 cut(s) 252, 793
BseNI ACTGG 2 cut(s) 96, 877
BseXI GCAGC 2 cut(s) 253, 376
BseYI CCCAGC 1 cut(s) 455
BshFI GGCC 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 252, 793
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 1 cut(s) 382
BspACI CCGC 1 cut(s) 465
BspANI GGCC 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 240, 360
BspQI GCTCTTC 1 cut(s) 882
BspT107I GGYRCC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 303
BsrI ACTGG 2 cut(s) 96, 877
BssAI RCCGGY 1 cut(s) 303
BssMI GATC 1 cut(s) 382
Bst4CI ACNGT 3 cut(s) 157, 247, 879
Bst6I CTCTTC 1 cut(s) 882
BstAPI GCANNNNNTGC 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 632
BstENI CCTNNNNNAGG 1 cut(s) 791
BstF5I GGATG 1 cut(s) 476
BstHHI GCGC 1 cut(s) 565
BstKTI GATC 1 cut(s) 385
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 253, 376
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 476
BtsIMutI CAGTG 1 cut(s) 103
CfoI GCGC 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 46, 301
Csp6I GTAC 2 cut(s) 33, 624
CviAII CATG 5 cut(s) 335, 511, 533, 641, 680
CviQI GTAC 2 cut(s) 33, 624
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Eco24I GRGCYC 1 cut(s) 614
Eco47I GGWCC 1 cut(s) 46
EcoNI CCTNNNNNAGG 1 cut(s) 791
EcoRI GAATTC 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 614
FaeI CATG 5 cut(s) 338, 514, 536, 644, 683
FaqI GGGAC 1 cut(s) 91
FatI CATG 5 cut(s) 334, 510, 532, 640, 679
Fnu4HI GCNGC 2 cut(s) 267, 390
FokI GGATG 1 cut(s) 483
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 2 cut(s) 267, 390
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 564
GluI GCNGC 2 cut(s) 267, 390
GsaI CCCAGC 1 cut(s) 459
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 304
HhaI GCGC 1 cut(s) 565
Hin1II CATG 5 cut(s) 338, 514, 536, 644, 683
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HincII GTYRAC 2 cut(s) 129, 799
HindII GTYRAC 2 cut(s) 129, 799
HinfI GANTC 5 cut(s) 557, 650, 683, 848, 863
HpaII CCGG 1 cut(s) 304
HphI GGTGA 2 cut(s) 242, 956
Hpy166II GTNNAC 2 cut(s) 129, 799
Hpy188I TCNGA 4 cut(s) 596, 693, 909, 931
Hpy188III TCNNGA 3 cut(s) 56, 87, 139
Hpy8I GTNNAC 2 cut(s) 129, 799
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 4 cut(s) 56, 59, 97, 568
HpyCH4III ACNGT 3 cut(s) 157, 247, 879
HpyCH4IV ACGT 3 cut(s) 42, 125, 631
HpyCH4V TGCA 3 cut(s) 344, 527, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpySE526I ACGT 3 cut(s) 42, 125, 631
Hsp92II CATG 5 cut(s) 338, 514, 536, 644, 683
HspAI GCGC 1 cut(s) 563
Kzo9I GATC 1 cut(s) 382
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 2 cut(s) 205, 397
Lsp1109I GCAGC 2 cut(s) 253, 376
LweI GCATC 1 cut(s) 935
MaeI CTAG 1 cut(s) 56
MaeII ACGT 3 cut(s) 42, 125, 631
MaeIII GTNAC 3 cut(s) 9, 115, 647
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 3 cut(s) 392, 683, 899
MfeI CAATTG 1 cut(s) 971
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 6 cut(s) 66, 217, 447, 485, 665, 971
MlyI GAGTC 3 cut(s) 566, 644, 692
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 8 cut(s) 63, 226, 495, 514, 687, 787, 940, 1006
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 4 cut(s) 92, 212, 488, 567
MslI CAYNNNNRTG 2 cut(s) 339, 645
MspI CCGG 1 cut(s) 304
MunI CAATTG 1 cut(s) 971
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 1 cut(s) 382
NlaIII CATG 5 cut(s) 338, 514, 536, 644, 683
NlaIV GGNNCC 2 cut(s) 240, 360
NmuCI GTSAC 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 848, 863
PkrI GCNGC 2 cut(s) 268, 391
PleI GAGTC 3 cut(s) 565, 644, 691
PpsI GAGTC 3 cut(s) 565, 644, 691
Ppu21I YACGTR 1 cut(s) 632
PspFI CCCAGC 1 cut(s) 455
PspN4I GGNNCC 2 cut(s) 240, 360
PspPI GGNCC 2 cut(s) 46, 301
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 2 cut(s) 34, 625
RsaNI GTAC 2 cut(s) 33, 624
RseI CAYNNNNRTG 2 cut(s) 339, 645
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 4 cut(s) 92, 212, 488, 567
SatI GCNGC 2 cut(s) 267, 390
Sau3AI GATC 1 cut(s) 382
Sau96I GGNCC 2 cut(s) 46, 301
SchI GAGTC 3 cut(s) 566, 644, 692
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 1 cut(s) 935
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 2 cut(s) 339, 645
Sse9I AATT 6 cut(s) 66, 217, 447, 485, 665, 971
SsiI CCGC 1 cut(s) 465
SspMI CTAG 1 cut(s) 56
TaaI ACNGT 3 cut(s) 157, 247, 879
TaiI ACGT 3 cut(s) 45, 128, 634
TaqI TCGA 1 cut(s) 881
TasI AATT 6 cut(s) 66, 217, 447, 485, 665, 971
TfiI GAWTC 2 cut(s) 848, 863
Tru1I TTAA 4 cut(s) 92, 212, 488, 567
Tru9I TTAA 4 cut(s) 92, 212, 488, 567
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 2 cut(s) 266, 389
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 5 cut(s) 17, 75, 417, 527, 694
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 791
XapI RAATTY 2 cut(s) 66, 665
XbaI TCTAGA 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.