RchiOBHm_Chr5g0025061

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
19083293 .. 19083836
544 bp
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UTR
Exon/CDS
Intron
PRQ30475

Sequence Viewer

Length: 291 bp
ATGAATCCCAAAACTTCTGATTTTGGCATGGTGCACATTTTCACGCACAATGAACTGGAGGCAAGTAGGGTTGTGGGAACATGTTTCTACAATGAGGATCAAGTGCTAATTACTATAGTAGGATATGCGTGGGAATTGTGGAAGGATGGTCATGGGCTAGAAATAATGGATCCCAAACTATCTGATTTATGTATGAAGGGTCAATTCTTAAGCTGCATCCATGTCGGTCTGCTATACGTGGAAGAAAATGCAGTTGATCGGCCCAACTATCTGATGTCATATCTATTTTGA

Protein Analysis

96

Amino Acids

11.05

Weight (kDa)

4.78

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022770)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0025061 RchiOBHm_Chr5g0025281
rosa_roxburghii Rroxscaffold_3G00223460
rosa_samantha Rh5CG194900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 105, 164, 177
AflII CTTAAG 1 cut(s) 208
AflIII ACRYGT 1 cut(s) 80
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
Alw21I GWGCWC 1 cut(s) 36
Alw44I GTGCAC 1 cut(s) 32
AlwI GGATC 3 cut(s) 105, 164, 177
AoxI GGCC 1 cut(s) 260
ApaLI GTGCAC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 36
BamHI GGATCC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 114
BfrI CTTAAG 1 cut(s) 208
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 171
BmsI GCATC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 77
BsaAI YACGTR 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 151, 216
BseNI ACTGG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 36
BsnI GGCC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 97, 169, 256
BspANI GGCC 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 3 cut(s) 105, 164, 177
BspTI CTTAAG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 60
BssMI GATC 3 cut(s) 97, 169, 256
BstAFI CTTAAG 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 238
BstF5I GGATG 2 cut(s) 151, 216
BstKTI GATC 3 cut(s) 100, 172, 259
BstMBI GATC 3 cut(s) 97, 169, 256
BstNSI RCATGY 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 151, 216
Cfr13I GGNCC 1 cut(s) 261
CviAII CATG 4 cut(s) 28, 81, 152, 221
CviJI RGCY 3 cut(s) 157, 213, 262
CviKI_1 RGCY 3 cut(s) 157, 213, 262
DpnI GATC 3 cut(s) 99, 171, 258
DpnII GATC 3 cut(s) 97, 169, 256
FaeI CATG 4 cut(s) 31, 84, 155, 224
FatI CATG 4 cut(s) 27, 80, 151, 220
Fnu4HI GCNGC 1 cut(s) 214
FokI GGATG 2 cut(s) 158, 203
Fsp4HI GCNGC 1 cut(s) 214
FspBI CTAG 1 cut(s) 158
GluI GCNGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 262
Hin1II CATG 4 cut(s) 31, 84, 155, 224
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 19, 184, 273
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 136, 190
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 34, 216, 251
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 4 cut(s) 31, 84, 155, 224
Kzo9I GATC 3 cut(s) 97, 169, 256
LpnPI CCDG 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 237
MalI GATC 3 cut(s) 99, 171, 258
MboI GATC 3 cut(s) 97, 169, 256
MboII GAAGA 1 cut(s) 254
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 3 cut(s) 108, 134, 203
MnlI CCTC 2 cut(s) 52, 88
MseI TTAA 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 208
NdeII GATC 3 cut(s) 97, 169, 256
NlaIII CATG 4 cut(s) 31, 84, 155, 224
NlaIV GGNNCC 1 cut(s) 171
NspI RCATGY 1 cut(s) 84
PciI ACATGT 1 cut(s) 80
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 215
Ppu21I YACGTR 1 cut(s) 238
PscI ACATGT 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 261
PsuI RGATCY 1 cut(s) 169
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 3 cut(s) 97, 169, 256
Sau96I GGNCC 1 cut(s) 261
SduI GDGCHC 1 cut(s) 36
SetI ASST 2 cut(s) 215, 240
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 3 cut(s) 108, 134, 203
SspMI CTAG 1 cut(s) 158
TaiI ACGT 1 cut(s) 240
TaqII GACCGA 1 cut(s) 215
TasI AATT 3 cut(s) 108, 134, 203
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseI GCWGC 1 cut(s) 213
TspDTI ATGAA 3 cut(s) 17, 66, 209
Vha464I CTTAAG 1 cut(s) 208
VneI GTGCAC 1 cut(s) 32
XceI RCATGY 1 cut(s) 84
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.