RchiOBHm_Chr5g0026321

Chromosome region maintenance protein 1 exportin

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
20332296 .. 20333886
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30590

Sequence Viewer

Length: 186 bp
ATGACTTCCATAGAGGTCAATCAATTTTTGAAAGGACTATTCAAGTCCAAGAATGACTGCTTGGCCAGATTTAAGGGAGACTTTCTGTTGCAATTAAAAGAATTTTCAGCACAGGACAACAAAGATGTTTATGCAGAGGAGGCTGCTGCACAAAGAGAGAGAAGGGCAACGGATTACGCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
Pfam Domains
Protein Families

Protein Analysis

61

Amino Acids

7.05

Weight (kDa)

6.17

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030183)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0026321
rosa_samantha Rh5BG182200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 101
AgsI TTSAA 2 cut(s) 31, 43
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
Alw26I GTCTC 1 cut(s) 72
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 143, 146
ApoI RAATTY 1 cut(s) 101
BalI TGGCCA 1 cut(s) 65
BbvI GCAGC 2 cut(s) 130, 133
BcoDI GTCTC 1 cut(s) 72
BisI GCNGC 2 cut(s) 144, 147
BlsI GCNGC 2 cut(s) 145, 148
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 130, 133
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 65
BspANI GGCC 1 cut(s) 65
BstMAI GTCTC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 130, 133
BsuRI GGCC 1 cut(s) 65
CviJI RGCY 2 cut(s) 65, 143
CviKI_1 RGCY 2 cut(s) 65, 143
EaeI YGGCCR 1 cut(s) 63
FaiI YATR 2 cut(s) 11, 132
FalI AAGNNNNNCTT 2 cut(s) 65, 97
Fnu4HI GCNGC 2 cut(s) 144, 147
Fsp4HI GCNGC 2 cut(s) 144, 147
GluI GCNGC 2 cut(s) 144, 147
HaeIII GGCC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 91, 134, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
LpnPI CCDG 2 cut(s) 79, 98
Lsp1109I GCAGC 2 cut(s) 130, 133
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 3 cut(s) 23, 92, 101
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 3 cut(s) 7, 130, 133
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 2 cut(s) 72, 95
Msp20I TGGCCA 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 145, 148
SaqAI TTAA 2 cut(s) 72, 95
SatI GCNGC 2 cut(s) 144, 147
SetI ASST 1 cut(s) 18
SgeI CNNG 5 cut(s) 55, 61, 73, 78, 125
Sse9I AATT 3 cut(s) 23, 92, 101
TasI AATT 3 cut(s) 23, 92, 101
Tru1I TTAA 2 cut(s) 72, 95
Tru9I TTAA 2 cut(s) 72, 95
TseI GCWGC 2 cut(s) 143, 146
TspGWI ACGGA 1 cut(s) 185
XapI RAATTY 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.