Rh5BG182200

atcrm1,atxpo1,hit2,xpo1,xpo1a

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0030183
Physical Location & Seq
Forward (+)
19992524 .. 19993062
539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG182200.1

Sequence Viewer

Length: 345 bp
ATGTTTGATCGGGAGTTCACCATCAAGCTTTTGAGTAATTCTTTCCCCAACATGACTTCCATAGAGGTCAATCAATTTTTGAAAGGACTATTCAAGTCCAAGAATGACTGCTTGGCCAGATTTAAGGGAGACTTTCTAGTGCAATTAAAAGAATTTTCAGCACAGACAATGTGGTATAATAAGAGGGAACCTGTTGCAGGACAACAAAGATGTTTATGCAGAGGAGGCTGCTGCACAAAGAGAGAGAAGGGCAACGGATTACGCCCAATGAGATCCAAGATGAAATGGTTGATTCTTAGATGGCTAATTAATATTCATGTTGGAGCTAAATTCATGTGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko04013 ko05164 ko05166 ko05169 map03008 map03013 map04013 map05164 map05166 map05169
Pfam Domains
Protein Families
CRM1_C IBN_N Xpo1

Protein Analysis

114

Amino Acids

13.38

Weight (kDa)

9.88

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRM1_C PF08767 4 - 53 3.9e-08 CRM1 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030183)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0026321
rosa_samantha Rh5BG182200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 2 cut(s) 152, 329
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 82, 94
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 28, 326
AluI AGCT 2 cut(s) 28, 326
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 228, 231
ApoI RAATTY 2 cut(s) 152, 329
AseI ATTAAT 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 10
BalI TGGCCA 1 cut(s) 116
BbvI GCAGC 2 cut(s) 215, 218
BccI CCATC 2 cut(s) 29, 294
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 137
BisI GCNGC 2 cut(s) 229, 232
BlsI GCNGC 2 cut(s) 230, 233
BmiI GGNNCC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 215, 218
BsgI GTGCAG 1 cut(s) 217
BshFI GGCC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 7, 272
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 267
BssMI GATC 2 cut(s) 7, 272
BstDEI CTNAG 1 cut(s) 296
BstENI CCTNNNNNAGG 1 cut(s) 195
BstKTI GATC 2 cut(s) 10, 275
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 7, 272
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 215, 218
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 1 cut(s) 116
CviAII CATG 3 cut(s) 52, 317, 334
CviJI RGCY 5 cut(s) 28, 116, 228, 304, 326
CviKI_1 RGCY 5 cut(s) 28, 116, 228, 304, 326
DdeI CTNAG 1 cut(s) 296
DpnI GATC 2 cut(s) 9, 274
DpnII GATC 2 cut(s) 7, 272
EaeI YGGCCR 1 cut(s) 114
EcoNI CCTNNNNNAGG 1 cut(s) 195
FaeI CATG 3 cut(s) 55, 320, 337
FaiI YATR 6 cut(s) 53, 62, 177, 217, 318, 335
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 3 cut(s) 51, 316, 333
Fnu4HI GCNGC 2 cut(s) 229, 232
Fsp4HI GCNGC 2 cut(s) 229, 232
FspBI CTAG 1 cut(s) 137
GluI GCNGC 2 cut(s) 229, 232
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 3 cut(s) 55, 320, 337
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 292
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 142, 197, 219, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 1 cut(s) 296
Hsp92II CATG 3 cut(s) 55, 320, 337
Kzo9I GATC 2 cut(s) 7, 272
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 3 cut(s) 130, 183, 204
Lsp1109I GCAGC 2 cut(s) 215, 218
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 338
MalI GATC 2 cut(s) 9, 274
MboI GATC 2 cut(s) 7, 272
MflI RGATCY 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 6 cut(s) 37, 74, 143, 152, 306, 329
MluNI TGGCCA 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 4 cut(s) 58, 177, 215, 218
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 3 cut(s) 123, 146, 309
Msp20I TGGCCA 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 225
NdeII GATC 2 cut(s) 7, 272
NlaIII CATG 3 cut(s) 55, 320, 337
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 230, 233
PshBI ATTAAT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 272
SaqAI TTAA 3 cut(s) 123, 146, 309
SatI GCNGC 2 cut(s) 229, 232
Sau3AI GATC 2 cut(s) 7, 272
SetI ASST 4 cut(s) 30, 69, 193, 328
Sse9I AATT 6 cut(s) 37, 74, 143, 152, 306, 329
SspI AATATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 137
TasI AATT 6 cut(s) 37, 74, 143, 152, 306, 329
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 3 cut(s) 123, 146, 309
Tru9I TTAA 3 cut(s) 123, 146, 309
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 2 cut(s) 228, 231
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 296, 305, 322
TspGWI ACGGA 1 cut(s) 270
VspI ATTAAT 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 195
XapI RAATTY 2 cut(s) 152, 329
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.