Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022680

Physical Location & Seq

Genomic Coordinates Reverse (-)

24017478 .. 24017729

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30961

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTGTCTCTGCCTGCAGTGGCTGGCTTTCGGTTTAGAAAGCTAGAAGAGAGAGCAAAAGTTGTCGAGGAGGTACAGAAGCATGTGTGGCCATTAATAGAAGTTGGTAAGGTAAAACCTGTTGTGCATCATCGTTTTCCATTCGCTAAAGCAGCAGAGGCTCACCGGCTCATGGAGAGTGGCAAGCATTTCGGAAAGATCCTGCTTATTCCTAATGACAGATTTGAGAATTCAAGGATAGAACAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

83

Amino Acids

9.6

Weight (kDa)

9.99

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N_2	PF13602	21 - 69	7.5e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022680)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0162661 RchiOBHm_Chr5g0030281
rosa_multiflora	Rmu_sc0004279.1_g000017
rosa_samantha	Rh4AG163700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	234
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	229
AseI	ATTAAT	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssMI	GATC	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	15, 25, 185
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 152, 158
BstNSI	RCATGY	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	15, 25, 185
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	83, 172
CviJI	RGCY	6 cut(s)	23, 27, 43, 91, 161, 169
CviKI_1	RGCY	6 cut(s)	23, 27, 43, 91, 161, 169
CviQI	GTAC	1 cut(s)	74
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	229
FaeI	CATG	2 cut(s)	86, 175
FaiI	YATR	2 cut(s)	84, 173
FatI	CATG	2 cut(s)	82, 171
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	2 cut(s)	86, 175
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	194
HpyCH4V	TGCA	2 cut(s)	17, 127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 152, 158
Hsp92II	CATG	2 cut(s)	86, 175
Kzo9I	GATC	1 cut(s)	198
LpnPI	CCDG	5 cut(s)	9, 27, 132, 179, 215
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	44
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	1 cut(s)	229
MluNI	TGGCCA	1 cut(s)	91
MnlI	CCTC	3 cut(s)	61, 64, 151
Mox20I	TGGCCA	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	91
MspI	CCGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	88, 152, 158
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	2 cut(s)	86, 175
NspI	RCATGY	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	198
SetI	ASST	4 cut(s)	45, 75, 114, 121
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	229
SspMI	CTAG	1 cut(s)	44
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	1 cut(s)	152
TspRI	CASTG	1 cut(s)	24
VspI	ATTAAT	1 cut(s)	95
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.