Rmu_sc0004279.1_g000017

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004279.1
Physical Location & Seq
Forward (+)
78324 .. 79133
810 bp
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UTR
Exon/CDS
Intron
Rmu_sc0004279.1_g000017.1.cds

Sequence Viewer

Length: 429 bp
atgtgtattgatattggatcatcaggtagtgaggaaaagttagcagcttgtaaagatcttggagctgatgtatgtatcaattacaagacagaggactttgttgcacgggtaaaggaagaaacaggtggcaaaggtgttgatgtcatcttggatagcctcgggcaagcctattttcagcgaaaccttgacagcttgaattttgatgggaggctttttctcattgggacaatggcggctggtttgcgagtcagaagtccagaaaacaaagcagtaataattagggaggtggaagaccatgtgtggcctgcaattgtggctggcaaggtgaaacctgtgatctacaagcatttccctttgtctgaatctgcagaggctcaccagttattggaaagtagccagcatattggaaagattctactttttccgtga

Protein Analysis

142

Amino Acids

15.56

Weight (kDa)

5.54

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022680)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0162661 RchiOBHm_Chr5g0030281
rosa_multiflora Rmu_sc0004279.1_g000017
rosa_samantha Rh4AG163700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 385
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 3 cut(s) 47, 65, 192
AluI AGCT 3 cut(s) 47, 65, 192
AlwI GGATC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 337, 368
AvaI CYCGRG 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 366
BglII AGATCT 1 cut(s) 55
BisI GCNGC 2 cut(s) 45, 234
BlsI GCNGC 2 cut(s) 46, 235
BmeT110I CYCGRG 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 385
BseNI ACTGG 1 cut(s) 379
BseXI GCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 158
Bsp143I GATC 3 cut(s) 17, 55, 336
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 3 cut(s) 17, 55, 336
BstC8I GCNNGC 4 cut(s) 165, 306, 319, 398
BstKTI GATC 3 cut(s) 20, 58, 339
BstMBI GATC 3 cut(s) 17, 55, 336
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 404
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 304
Cac8I GCNNGC 4 cut(s) 165, 306, 319, 398
CviAII CATG 1 cut(s) 296
DpnI GATC 3 cut(s) 19, 57, 338
DpnII GATC 3 cut(s) 17, 55, 336
Eco88I CYCGRG 1 cut(s) 158
FaeI CATG 1 cut(s) 299
FaiI YATR 3 cut(s) 73, 297, 402
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 45, 234
Fsp4HI GCNGC 2 cut(s) 45, 234
GluI GCNGC 2 cut(s) 45, 234
HaeIII GGCC 1 cut(s) 304
Hin1II CATG 1 cut(s) 299
HinfI GANTC 3 cut(s) 246, 362, 412
HphI GGTGA 2 cut(s) 337, 368
Hpy188I TCNGA 2 cut(s) 251, 361
Hpy188III TCNNGA 1 cut(s) 257
HpyCH4V TGCA 3 cut(s) 104, 308, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
Hsp92II CATG 1 cut(s) 299
Kzo9I GATC 3 cut(s) 17, 55, 336
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 9 cut(s) 9, 108, 222, 270, 303, 318, 345, 392, 410
Lsp1109I GCAGC 1 cut(s) 56
MalI GATC 3 cut(s) 19, 57, 338
MboI GATC 3 cut(s) 17, 55, 336
MboII GAAGA 2 cut(s) 128, 302
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 1 cut(s) 55
MluCI AATT 4 cut(s) 79, 196, 276, 309
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 6 cut(s) 25, 85, 167, 201, 277, 364
MunI CAATTG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 3 cut(s) 17, 55, 336
NlaIII CATG 1 cut(s) 299
PfeI GAWTC 2 cut(s) 362, 412
PflMI CCANNNNNTGG 1 cut(s) 385
PkrI GCNGC 2 cut(s) 46, 235
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 55
SatI GCNGC 2 cut(s) 45, 234
Sau3AI GATC 3 cut(s) 17, 55, 336
SchI GAGTC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 366
Sse9I AATT 4 cut(s) 79, 196, 276, 309
SsiI CCGC 1 cut(s) 233
TasI AATT 4 cut(s) 79, 196, 276, 309
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 2 cut(s) 362, 412
TseI GCWGC 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 414
Van91I CCANNNNNTGG 1 cut(s) 385
XapI RAATTY 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.