Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030214

Physical Location & Seq

Genomic Coordinates Forward (+)

30238524 .. 30238877

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCCATCATCGACTCCGACAGGACCCTCATCTGCCTTCGCAACGCAATCCAATTCATCACCACCATGGCCCAGAGAAAACTCCGCTTCATGTTCGTCAACACCAACTCCCTCTGTTACACCCCATCCACGAATACTCTCACCAAGAAGATCGTCTCCGGCTCCACTCAGCTGTTGGATTGCCTTGTCGTCTTCAACTCCAAGCGGAAGTCCTCGATGATTCTAGAGGCTTATAGGTTGCAGATTCCAATTGTTTGGCTTGTGCACTCTGACATGGCTATCGAGTATTACAACAAGATCACATATTTGATTCCATGTAATTCCTGCAGTTTGTGTACCTGTTTTGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

117

Amino Acids

13.39

Weight (kDa)

9.08

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	55 - 110	6.7e-06	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030214)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036111
rosa_samantha	Rh5AG247000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	85, 205
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	160
Alw44I	GTGCAC	1 cut(s)	263
AoxI	GGCC	2 cut(s)	3, 69
ApaLI	GTGCAC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	24, 70
AsuHPI	GGTGA	2 cut(s)	52, 133
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	2 cut(s)	14, 133
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 70
BmiI	GGNNCC	2 cut(s)	26, 163
BpiI	GAAGAC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	267
BshFI	GGCC	2 cut(s)	5, 71
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	5, 71
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	150, 297
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	2 cut(s)	85, 205
BspANI	GGCC	2 cut(s)	5, 71
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	26, 163
BspMAI	CTGCAG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	150, 297
BssT1I	CCWWGG	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	153, 300
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	150, 297
BstSFI	CTRYAG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	5, 71
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	24, 70
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	4 cut(s)	67, 91, 274, 315
CviJI	RGCY	7 cut(s)	5, 71, 162, 172, 230, 259, 278
CviKI_1	RGCY	7 cut(s)	5, 71, 162, 172, 230, 259, 278
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	152, 299
DpnII	GATC	2 cut(s)	150, 297
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	4 cut(s)	70, 94, 277, 318
FaiI	YATR	6 cut(s)	68, 92, 234, 275, 304, 316
FatI	CATG	4 cut(s)	66, 90, 273, 314
FokI	GGATG	1 cut(s)	112
FspBI	CTAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	5, 71
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	4 cut(s)	70, 94, 277, 318
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	14, 220, 244, 310
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	52, 133
Hpy166II	GTNNAC	3 cut(s)	100, 265, 336
Hpy188I	TCNGA	2 cut(s)	19, 271
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	3 cut(s)	100, 265, 336
HpyAV	CCTTC	1 cut(s)	47
HpyCH4V	TGCA	4 cut(s)	241, 265, 327, 347
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	70, 94, 277, 318
Kzo9I	GATC	2 cut(s)	150, 297
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	4 cut(s)	7, 86, 172, 337
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	152, 299
MboI	GATC	2 cut(s)	150, 297
MboII	GAAGA	2 cut(s)	160, 184
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	53, 249, 319, 348
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	2 cut(s)	42, 156
MnlI	CCTC	4 cut(s)	38, 122, 220, 223
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	150, 297
NlaIII	CATG	4 cut(s)	70, 94, 277, 318
NlaIV	GGNNCC	2 cut(s)	26, 163
PfeI	GAWTC	3 cut(s)	220, 244, 310
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	26, 163
PspPI	GGNCC	2 cut(s)	24, 70
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	150, 297
Sau96I	GGNCC	2 cut(s)	24, 70
SchI	GAGTC	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	3 cut(s)	174, 239, 341
SfcI	CTRYAG	1 cut(s)	325
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	53, 249, 319, 348
SsiI	CCGC	2 cut(s)	85, 205
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	3 cut(s)	12, 215, 282
TasI	AATT	4 cut(s)	53, 249, 319, 348
TfiI	GAWTC	3 cut(s)	220, 244, 310
TspDTI	ATGAA	2 cut(s)	46, 79
VneI	GTGCAC	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.