Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0030214

Physical Location & Seq

Genomic Coordinates Forward (+)

30602766 .. 30608912

Gene Structure 6147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG247000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCATCATCGACTCCGACAGGGCCCTCATCTGCCTTCGCAACGCAATCCAATTCATCACCACCTTGGCCCAGAGCAAACTCCGCTTCATGTTCGTCAACACCAACTCCCTCTGCTACAAGAATACTCTCTGGCACACCGACGGCTTTCTCACCAACAGCCACAGCCCTAAGAAGTTCAGATCCTGCTACAAGAAGATCGTCTTCGGCCCCACTCAGCTGTTGGATTGCCTTGTCGTCTTCAACTCCAAGCGGAAGTCCTCGATGATTCTAGAGGCTTATAGGTTGCAGATTCCAATTGTTTGGCTTGTGCACTCTGACATGGCTATCGAATGGAATTACCAAAACCAACGACATTACATGCAAAGCACCATTTTCCATAGGAAACAACATACTTGTCGTCGGAATTTGCCGTCCAAAACTGTGAAGAAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

145

Amino Acids

17.16

Weight (kDa)

10.08

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030214)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036111
rosa_samantha	Rh5AG247000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	85, 253
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	406
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw21I	GWGCWC	1 cut(s)	315
Alw44I	GTGCAC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	186
AoxI	GGCC	4 cut(s)	3, 24, 69, 208
ApaI	GGGCCC	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	406
AspS9I	GGNCC	4 cut(s)	24, 25, 70, 209
AsuHPI	GGTGA	2 cut(s)	52, 145
BaeGI	GKGCMC	2 cut(s)	28, 315
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	28
BbsI	GAAGAC	2 cut(s)	196, 232
Bbv12I	GWGCWC	1 cut(s)	315
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	2 cut(s)	160, 397
BfaI	CTAG	1 cut(s)	272
BmgT120I	GGNCC	4 cut(s)	24, 25, 70, 209
BmiI	GGNNCC	2 cut(s)	26, 211
BpiI	GAAGAC	2 cut(s)	196, 232
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
BseDI	CCNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	230
BseSI	GKGCMC	2 cut(s)	28, 315
BshFI	GGCC	4 cut(s)	5, 26, 71, 210
BsiHKAI	GWGCWC	1 cut(s)	315
BsnI	GGCC	4 cut(s)	5, 26, 71, 210
Bsp120I	GGGCCC	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	28, 315
Bsp143I	GATC	2 cut(s)	182, 198
BspACI	CCGC	2 cut(s)	85, 253
BspANI	GGCC	4 cut(s)	5, 26, 71, 210
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	26, 211
BspPI	GGATC	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	182, 198
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	171, 216
BstKTI	GATC	2 cut(s)	185, 201
BstMBI	GATC	2 cut(s)	182, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	364
BstSLI	GKGCMC	2 cut(s)	28, 315
BstV2I	GAAGAC	2 cut(s)	196, 232
BstX2I	RGATCY	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	5, 26, 71, 210
CaiI	CAGNNNCTG	1 cut(s)	186
Cfr13I	GGNCC	4 cut(s)	24, 25, 70, 209
CviAII	CATG	3 cut(s)	91, 322, 361
DdeI	CTNAG	2 cut(s)	171, 216
DpnI	GATC	2 cut(s)	184, 200
DpnII	GATC	2 cut(s)	182, 198
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	28
EcoO109I	RGGNCCY	2 cut(s)	24, 25
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	94, 325, 364
FaiI	YATR	6 cut(s)	92, 282, 323, 362, 381, 393
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	3 cut(s)	90, 321, 360
FriOI	GRGCYC	1 cut(s)	28
FspBI	CTAG	1 cut(s)	272
HaeIII	GGCC	4 cut(s)	5, 26, 71, 210
Hin1II	CATG	3 cut(s)	94, 325, 364
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	14, 268, 292
HphI	GGTGA	2 cut(s)	52, 145
Hpy166II	GTNNAC	2 cut(s)	100, 313
Hpy188I	TCNGA	4 cut(s)	19, 182, 319, 405
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	2 cut(s)	100, 313
Hpy99I	CGWCG	2 cut(s)	146, 405
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	289, 313, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	2 cut(s)	171, 216
Hsp92II	CATG	3 cut(s)	94, 325, 364
Kzo9I	GATC	2 cut(s)	182, 198
LpnPI	CCDG	4 cut(s)	7, 86, 118, 199
MaeI	CTAG	1 cut(s)	272
MalI	GATC	2 cut(s)	184, 200
MboI	GATC	2 cut(s)	182, 198
MboII	GAAGA	3 cut(s)	196, 208, 232
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	28, 315
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	53, 297, 337, 406
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	3 cut(s)	42, 204, 383
MnlI	CCTC	4 cut(s)	38, 122, 268, 271
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	84
NdeII	GATC	2 cut(s)	182, 198
NlaIII	CATG	3 cut(s)	94, 325, 364
NlaIV	GGNNCC	2 cut(s)	26, 211
NspI	RCATGY	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	268, 292
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	26, 211
PspOMI	GGGCCC	1 cut(s)	24
PspPI	GGNCC	4 cut(s)	24, 25, 70, 209
PstNI	CAGNNNCTG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	220
Sau3AI	GATC	2 cut(s)	182, 198
Sau96I	GGNCC	4 cut(s)	24, 25, 70, 209
SchI	GAGTC	1 cut(s)	8
SduI	GDGCHC	2 cut(s)	28, 315
SetI	ASST	4 cut(s)	68, 222, 287, 437
Sse9I	AATT	4 cut(s)	53, 297, 337, 406
SsiI	CCGC	2 cut(s)	85, 253
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	424
TaqI	TCGA	3 cut(s)	12, 263, 330
TasI	AATT	4 cut(s)	53, 297, 337, 406
TfiI	GAWTC	2 cut(s)	268, 292
TspDTI	ATGAA	2 cut(s)	46, 79
VneI	GTGCAC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	406
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.