Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025052

Physical Location & Seq

Genomic Coordinates Forward (+)

31802196 .. 31802776

Gene Structure 581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATGCGTAACTTTCTCCTCCTCGTTCTCTTCGCTTGTTTCCTCCTTTCTCCGGCTGCCGCAGACTCCTCTCCTGGACAGAGGGACGACATTGAAGAAGGCGGTTGGGAAGAGTCCTATAACATAGACAAAGCTCAACGGATCGCCGGGTGGGCGCTCTCCGAACACAACTCGAATTCTTCCCTTCTCGGTACCTATTTGAGCCTCGCGGGCATCGACAGCGTCTACACTCAGGTCGTATCGGGAAAGCTCTACAAGATTAGGATGAAGGTCGTCATTCCGTACTCCAGTGACCCTTCTTCTGAATACACCTATGAAACTCTTGTGTGGGAGAAGCCTTGGATCAACTTTAGGCAATTGGAATACCTCCGTACAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

126

Amino Acids

14.35

Weight (kDa)

4.91

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	43 - 119	4.8e-06	Cystatin domain
SQAPI	PF16845	44 - 122	1.3e-10	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0025052)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0037391
rosa_laevigata	RLG00000033779
rosa_samantha	Rh5AG254100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	209
AciI	CCGC	3 cut(s)	60, 102, 209
AclWI	GGATC	2 cut(s)	149, 350
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	3 cut(s)	193, 284, 373
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	134, 250
AluI	AGCT	2 cut(s)	134, 250
AlwI	GGATC	2 cut(s)	149, 350
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	175
Asp718I	GGTACC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	148
BfoI	RGCGCY	1 cut(s)	158
BglI	GCCNNNNNGGC	2 cut(s)	152, 210
BisI	GCNGC	2 cut(s)	57, 60
BlsI	GCNGC	2 cut(s)	58, 61
Bme1390I	CCNGG	2 cut(s)	75, 148
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	75, 148
BmsI	GCATC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	3 cut(s)	8, 11, 58
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	53, 147
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	141, 342
BspACI	CCGC	3 cut(s)	60, 102, 209
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	2 cut(s)	149, 350
BspT107I	GGYRCC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	2 cut(s)	141, 342
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	2 cut(s)	35, 105
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	144, 345
BstMBI	GATC	2 cut(s)	141, 342
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 210, 219
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	73, 146
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	295, 381
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	157
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	192, 283, 372
CviJI	RGCY	5 cut(s)	56, 134, 204, 250, 337
CviKI_1	RGCY	5 cut(s)	56, 134, 204, 250, 337
CviQI	GTAC	3 cut(s)	192, 283, 372
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	143, 344
DpnII	GATC	2 cut(s)	141, 342
Eam1104I	CTCTTC	2 cut(s)	35, 105
EarI	CTCTTC	2 cut(s)	35, 105
Eco130I	CCWWGG	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaiI	YATR	3 cut(s)	120, 125, 315
FaqI	GGGAC	1 cut(s)	98
FauI	CCCGC	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	57, 60
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	2 cut(s)	57, 60
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	2 cut(s)	57, 60
GsuI	CTGGAG	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	158
HapII	CCGG	2 cut(s)	53, 147
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	2 cut(s)	65, 113
HpaII	CCGG	2 cut(s)	53, 147
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	163, 304
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	4 cut(s)	92, 194, 262, 306
HpyCH4III	ACNGT	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 210, 219
HpyF3I	CTNAG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	155
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	141, 342
LpnPI	CCDG	6 cut(s)	60, 66, 87, 160, 218, 301
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	8, 290
MalI	GATC	2 cut(s)	143, 344
MboI	GATC	2 cut(s)	141, 342
MboII	GAAGA	5 cut(s)	22, 107, 122, 171, 291
MfeI	CAATTG	1 cut(s)	356
MluCI	AATT	2 cut(s)	175, 356
MlyI	GAGTC	2 cut(s)	59, 122
MnlI	CCTC	7 cut(s)	29, 32, 53, 75, 79, 215, 377
MspI	CCGG	2 cut(s)	53, 147
MspR9I	CCNGG	2 cut(s)	75, 148
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	152, 210, 219
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	2 cut(s)	141, 342
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PflFI	GACNNNGTC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	58, 61
PleI	GAGTC	2 cut(s)	59, 121
PpsI	GAGTC	2 cut(s)	59, 121
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	3 cut(s)	193, 284, 373
RsaNI	GTAC	3 cut(s)	192, 283, 372
SatI	GCNGC	2 cut(s)	57, 60
Sau3AI	GATC	2 cut(s)	141, 342
SchI	GAGTC	2 cut(s)	59, 122
ScrFI	CCNGG	2 cut(s)	75, 148
SetI	ASST	7 cut(s)	136, 197, 237, 252, 273, 314, 369
SfaNI	GCATC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	175, 356
SsiI	CCGC	3 cut(s)	60, 102, 209
StyD4I	CCNGG	2 cut(s)	73, 146
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	173, 216
TasI	AATT	2 cut(s)	175, 356
TauI	GCSGC	1 cut(s)	62
TscAI	CASTG	2 cut(s)	295, 381
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	281, 330
TspGWI	ACGGA	3 cut(s)	154, 270, 359
TspRI	CASTG	2 cut(s)	295, 381
Tth111I	GACNNNGTC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.