RLG00000033779

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0025052
Physical Location & Seq
Forward (+)
32031559 .. 32032056
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033779

Sequence Viewer

Length: 318 bp
ATGATGCGTAACTTTCTCCTCCTCGTTCTCTTCGCTTGTTTCCTCCTTTCTCCGGCTGCCGCAGACGCCTCTCCTGGACAGAGGGACGACATTGAGGAAGGCGGTTGGGTAGAGTCCTATAACATAGACAAAGCTCAACGGATCGCCGGGTGGGCGCTCTCCAAACACAACTCGAATTCTTCTTTTCTCGATACCTATTTGAGCCTCGCGGGCATCGACAGCGTCTACACTCAGATCGTATCGGGAAAGCTCTACAAGATTAGGATGAAGGCAATTGGAATACCTCCGTGCAGTGTGATGGGTCGATCAAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.53

Weight (kDa)

6.56

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025052)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0037391
rosa_laevigata RLG00000033779
rosa_samantha Rh5AG254100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 209
AciI CCGC 3 cut(s) 60, 102, 209
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 52
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 2 cut(s) 134, 250
AluI AGCT 2 cut(s) 134, 250
AlwI GGATC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 175
AspLEI GCGC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 148
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 148
BfoI RGCGCY 1 cut(s) 158
BglI GCCNNNNNGGC 2 cut(s) 152, 210
BisI GCNGC 2 cut(s) 57, 60
BlsI GCNGC 2 cut(s) 58, 61
Bme1390I CCNGG 2 cut(s) 75, 148
BmrFI CCNGG 2 cut(s) 75, 148
BmsI GCATC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 245
BseRI GAGGAG 2 cut(s) 8, 11
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 53, 147
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 98
Bsp143I GATC 3 cut(s) 141, 234, 305
BspACI CCGC 3 cut(s) 60, 102, 209
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 209
BspPI GGATC 1 cut(s) 149
BssMI GATC 3 cut(s) 141, 234, 305
BssNI GRCGYC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 270
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 3 cut(s) 144, 237, 308
BstMBI GATC 3 cut(s) 141, 234, 305
BstMWI GCNNNNNNNGC 4 cut(s) 65, 152, 210, 219
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 73, 146
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 157
CseI GACGC 2 cut(s) 74, 211
CviJI RGCY 4 cut(s) 56, 134, 204, 250
CviKI_1 RGCY 4 cut(s) 56, 134, 204, 250
DdeI CTNAG 1 cut(s) 231
DpnI GATC 3 cut(s) 143, 236, 307
DpnII GATC 3 cut(s) 141, 234, 305
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 73
FaiI YATR 2 cut(s) 120, 125
FaqI GGGAC 1 cut(s) 98
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 57, 60
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 57, 60
GlaI GCGC 1 cut(s) 156
GluI GCNGC 2 cut(s) 57, 60
HaeII RGCGCY 1 cut(s) 158
HapII CCGG 2 cut(s) 53, 147
HgaI GACGC 2 cut(s) 74, 211
HhaI GCGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 1 cut(s) 113
HpaII CCGG 2 cut(s) 53, 147
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 188, 243
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 92, 262
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 152, 210, 219
HpyF3I CTNAG 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 1 cut(s) 155
Kzo9I GATC 3 cut(s) 141, 234, 305
LpnPI CCDG 4 cut(s) 60, 66, 87, 160
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 8
MalI GATC 3 cut(s) 143, 236, 307
MboI GATC 3 cut(s) 141, 234, 305
MboII GAAGA 2 cut(s) 22, 171
MfeI CAATTG 1 cut(s) 273
MluCI AATT 2 cut(s) 175, 273
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 8 cut(s) 29, 32, 53, 75, 79, 88, 215, 294
MspI CCGG 2 cut(s) 53, 147
MspR9I CCNGG 2 cut(s) 75, 148
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 4 cut(s) 65, 152, 210, 219
NciI CCSGG 1 cut(s) 148
NdeII GATC 3 cut(s) 141, 234, 305
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PflFI GACNNNGTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 2 cut(s) 58, 61
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 221
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 3 cut(s) 141, 234, 305
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 75, 148
SetI ASST 4 cut(s) 136, 197, 252, 286
SfaNI GCATC 1 cut(s) 222
Sse9I AATT 2 cut(s) 175, 273
SsiI CCGC 3 cut(s) 60, 102, 209
StyD4I CCNGG 2 cut(s) 73, 146
TaqI TCGA 4 cut(s) 173, 189, 216, 304
TasI AATT 2 cut(s) 175, 273
TauI GCSGC 1 cut(s) 62
TscAI CASTG 1 cut(s) 298
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 2 cut(s) 154, 276
TspRI CASTG 1 cut(s) 298
Tth111I GACNNNGTC 1 cut(s) 221
XapI RAATTY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.