Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030281

Physical Location & Seq

Genomic Coordinates Forward (+)

32793856 .. 32795263

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGATGGCAATAAAGAGGTCTAACTACTGCTTTCACAGGAGTGGTGGGAAAGATCCATGCCATATCAACAGCAACCCATACATGATTGCTTTCGGCATTATGCAAATCGTATTGTCGCAGATTCCAAACTTCGACCAGTTGTGGAGGCTCTCAATTGTTGCGGCAGCTATCACTACAAGAAAAGTAGTCTACCACAACATCACAATAACAAAATGCTCTAAATACTCTACATACAGTTTTCCACAACGAGTGATCTGGAGTATTGAATTGTTGAAATTTGAGATAATTTTGGATATTGCTGATTCAATTGGGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

106

Amino Acids

12.22

Weight (kDa)

9.47

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	8 - 85	2.7e-10	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030281)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0038181
rosa_samantha	Rh5AG258700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	2 cut(s)	275, 314
AgsI	TTSAA	3 cut(s)	266, 274, 306
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AlwI	GGATC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	275, 314
BbvI	GCAGC	1 cut(s)	176
BisI	GCNGC	2 cut(s)	162, 165
BlsI	GCNGC	2 cut(s)	163, 166
BpmI	CTGGAG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	52, 252
BspACI	CCGC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	52, 252
Bst4CI	ACNGT	1 cut(s)	236
BstKTI	GATC	2 cut(s)	55, 255
BstMBI	GATC	2 cut(s)	52, 252
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
CviAII	CATG	2 cut(s)	57, 82
CviJI	RGCY	2 cut(s)	148, 167
CviKI_1	RGCY	2 cut(s)	148, 167
DpnI	GATC	2 cut(s)	54, 254
DpnII	GATC	2 cut(s)	52, 252
FaeI	CATG	2 cut(s)	60, 85
FaiI	YATR	6 cut(s)	58, 63, 79, 83, 101, 232
FatI	CATG	2 cut(s)	56, 81
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	162, 165
Fsp4HI	GCNGC	2 cut(s)	162, 165
GluI	GCNGC	2 cut(s)	162, 165
GsuI	CTGGAG	1 cut(s)	277
Hin1II	CATG	2 cut(s)	60, 85
HinfI	GANTC	2 cut(s)	121, 302
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	1 cut(s)	103
Hsp92II	CATG	2 cut(s)	60, 85
Kzo9I	GATC	2 cut(s)	52, 252
LpnPI	CCDG	3 cut(s)	22, 149, 241
Lsp1109I	GCAGC	1 cut(s)	176
MalI	GATC	2 cut(s)	54, 254
MboI	GATC	2 cut(s)	52, 252
MfeI	CAATTG	2 cut(s)	153, 306
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	6 cut(s)	153, 266, 275, 285, 306, 314
MnlI	CCTC	2 cut(s)	9, 138
MslI	CAYNNNNRTG	1 cut(s)	39
MunI	CAATTG	2 cut(s)	153, 306
NdeII	GATC	2 cut(s)	52, 252
NlaIII	CATG	2 cut(s)	60, 85
OliI	CACNNNNGTG	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	121, 302
PkrI	GCNGC	2 cut(s)	163, 166
PsuI	RGATCY	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	39
SatI	GCNGC	2 cut(s)	162, 165
Sau3AI	GATC	2 cut(s)	52, 252
SetI	ASST	2 cut(s)	20, 169
SgeI	CNNG	7 cut(s)	49, 69, 94, 148, 189, 260, 268
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	6 cut(s)	153, 266, 275, 285, 306, 314
SsiI	CCGC	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	132
TasI	AATT	6 cut(s)	153, 266, 275, 285, 306, 314
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	121, 302
TseI	GCWGC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	275, 314
XmiI	GTMKAC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.