Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0030281

Physical Location & Seq

Genomic Coordinates Forward (+)

33751372 .. 33752243

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG258700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGATTGCAGGTCCTATTGCCATGCTCTTGTTTTCTGGAGTGACTTACTACACTTCAACTCTGCTCTGTGCTTGCTATCGCTCCGGAGACACCGGACAAAGGAACTACACATACATGCAGGCTGTTCAATCTACCCTCGGATAGGAGGAGCTAAGCTCAAGATTTGTGGAGTTGTTCAGTACTTGAACCTAGTTGGATACACAATAGCATCATCTATAAGCATGATGGCAATAAAGAGGTCTAACTACTGCTTTCACAGGAGTGGTGGGAAAGATCCATGCCATATCAACAGCAACCCATACATGATTGCTTTCGGCATTATGCAAATCGTATTGTCGCAGATTCCGAACTTCGACCAGTTGTGGTGGCTCTCAATTGTTGCGGCAGCTATCACTACAAGAAAAGTAGTCTACCACAACATCACAATAACAAAATGCTCTAAATACTCTACATACAGTTTTCCACAACGAGTGATCTGGAGTATTGAATTGTTGAAATTTGAGATAATTTTGGATATTGCTGATTCAATTGGGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

180

Amino Acids

20.55

Weight (kDa)

9.35

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	44 - 159	7.8e-17	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030281)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0038181
rosa_samantha	Rh5AG258700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	411
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	497, 536
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	100, 143
AgsI	TTSAA	6 cut(s)	58, 129, 187, 488, 496, 528
AleI	CACNNNNGTG	1 cut(s)	261
AluBI	AGCT	3 cut(s)	152, 157, 389
AluI	AGCT	3 cut(s)	152, 157, 389
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	497, 536
AspS9I	GGNCC	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	1 cut(s)	220
BciVI	GTATCC	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	384, 387
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	2 cut(s)	385, 388
BmcAI	AGTACT	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmsI	GCATC	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpmI	CTGGAG	2 cut(s)	58, 499
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	2 cut(s)	84, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 143
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	100, 143
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	85, 94
BslI	CCNNNNNNNGG	2 cut(s)	100, 143
BsmAI	GTCTC	1 cut(s)	82
Bsp13I	TCCGGA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	274, 474
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	383
BspEI	TCCGGA	1 cut(s)	84
BspPI	GGATC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	2 cut(s)	274, 474
Bst4CI	ACNGT	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	74, 121
BstDEI	CTNAG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	277, 477
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	274, 474
BstNSI	RCATGY	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	74, 121
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	5 cut(s)	23, 116, 223, 279, 304
CviJI	RGCY	5 cut(s)	123, 152, 157, 370, 389
CviKI_1	RGCY	5 cut(s)	123, 152, 157, 370, 389
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	276, 476
DpnII	GATC	2 cut(s)	274, 474
Eco47I	GGWCC	1 cut(s)	12
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	12
FaeI	CATG	5 cut(s)	26, 119, 226, 282, 307
FatI	CATG	5 cut(s)	22, 115, 222, 278, 303
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	384, 387
Fsp4HI	GCNGC	2 cut(s)	384, 387
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	2 cut(s)	384, 387
GsuI	CTGGAG	2 cut(s)	58, 499
HapII	CCGG	2 cut(s)	85, 94
Hin1II	CATG	5 cut(s)	26, 119, 226, 282, 307
HinfI	GANTC	2 cut(s)	343, 524
HpaII	CCGG	2 cut(s)	85, 94
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	141, 348
Hpy188III	TCNNGA	4 cut(s)	37, 85, 160, 478
Hpy8I	GTNNAC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4V	TGCA	3 cut(s)	9, 119, 325
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	5 cut(s)	26, 119, 226, 282, 307
Kpn2I	TCCGGA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	274, 474
LmnI	GCTCC	2 cut(s)	87, 149
LpnPI	CCDG	7 cut(s)	22, 98, 105, 107, 244, 371, 463
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	276, 476
MboI	GATC	2 cut(s)	274, 474
MfeI	CAATTG	2 cut(s)	375, 528
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	6 cut(s)	375, 488, 497, 507, 528, 536
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	140, 147, 231
MroI	TCCGGA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	114, 261
MspI	CCGG	2 cut(s)	85, 94
MunI	CAATTG	2 cut(s)	375, 528
NdeII	GATC	2 cut(s)	274, 474
NlaIII	CATG	5 cut(s)	26, 119, 226, 282, 307
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	343, 524
PkrI	GCNGC	2 cut(s)	385, 388
PpuMI	RGGWCCY	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	12
PspPPI	RGGWCCY	1 cut(s)	12
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	114, 261
SatI	GCNGC	2 cut(s)	384, 387
Sau3AI	GATC	2 cut(s)	274, 474
Sau96I	GGNCC	1 cut(s)	12
ScaI	AGTACT	1 cut(s)	182
SetI	ASST	6 cut(s)	14, 154, 159, 192, 242, 391
SfaNI	GCATC	1 cut(s)	218
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	114, 261
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	6 cut(s)	375, 488, 497, 507, 528, 536
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	458
TaqI	TCGA	1 cut(s)	354
TasI	AATT	6 cut(s)	375, 488, 497, 507, 528, 536
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	2 cut(s)	343, 524
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	2 cut(s)	497, 536
XceI	RCATGY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.