Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030285

Physical Location & Seq

Genomic Coordinates Forward (+)

37541814 .. 37542056

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32113

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGCTTGTAGGGTGGCAGCAAAGATATGCTCGTTTCTGTGGAAGAATAATGGTCCTGTCAATTCTTTCTTTGCTACTCTATCCATTTCTTTGGGCTTGGACGGTCATTGGGACTCTCTGGTTTAGAAGCTCAAAAGACTGTTTGCCTGAAGATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023052 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

52

Amino Acids

6.14

Weight (kDa)

8.84

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030285)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042751
rosa_roxburghii	Rroxscaffold_1G00037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	103, 140
BstV1I	GCAGC	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	52
CviJI	RGCY	2 cut(s)	95, 129
CviKI_1	RGCY	2 cut(s)	95, 129
Eco47I	GGWCC	1 cut(s)	52
FaiI	YATR	1 cut(s)	27
FaqI	GGGAC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	103, 140
LpnPI	CCDG	2 cut(s)	68, 103
Lsp1109I	GCAGC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	54
MluCI	AATT	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	52
SatI	GCNGC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	106
SetI	ASST	1 cut(s)	131
SgeI	CNNG	5 cut(s)	17, 42, 67, 108, 130
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	103, 140
TasI	AATT	1 cut(s)	60
TseI	GCWGC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.