Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0030285

Physical Location & Seq

Genomic Coordinates Reverse (-)

55227410 .. 55232814

Gene Structure 5405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCATCGAGGCGTCGATTTCAAGTGCTAAGTCCCTTCAAATCGTTATGCTTGTAGGGTGGCAGCAAAGATATGCTCGTTTCTGTGGAAGAATAATGGTCCTGTCAATTCTTTCTTTGCTACTCTATCCATTTCTTTGGGCTTGGACGATCATTGGGACTCTCTGGTTTAGAAGCTCAAAAGACTGTGGTGAAGCCCCTACCGAGTTGCGAGGACGAACGCTCACCCCTACAACAGTGTGGTTGCAGGGATTTTTCCAAAACATAGCGGACAAAGCATTGAATGCAATGCCTATACAACTTGACTTACTACACCATGCAGATGAGAAAGCCACAAATATGCTGGGAAACCAAAAGATAACCATTGAGGCGAACATTTGGTGTGACAAATGTCGGTCCAAGGCCATGAAAATAGCTGCTGTAGAAGATGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023052 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

8.76

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030285)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042751
rosa_roxburghii	Rroxscaffold_1G00037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	24, 41, 283
AluBI	AGCT	2 cut(s)	177, 416
AluI	AGCT	2 cut(s)	177, 416
AoxI	GGCC	2 cut(s)	3, 402
ApeKI	GCWGC	2 cut(s)	64, 416
AspS9I	GGNCC	2 cut(s)	100, 396
AsuHPI	GGTGA	2 cut(s)	203, 217
AvaII	GGWCC	2 cut(s)	100, 396
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	76, 403
BccI	CCATC	2 cut(s)	14, 422
BfmI	CTRYAG	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	65, 417
BlsI	GCNGC	2 cut(s)	66, 418
Bme18I	GGWCC	2 cut(s)	100, 396
BmgT120I	GGNCC	2 cut(s)	100, 396
BoxI	GACNNNNGTC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	76, 403
BseYI	CCCAGC	1 cut(s)	343
BshFI	GGCC	2 cut(s)	5, 404
BslFI	GGGAC	2 cut(s)	19, 172
BsmFI	GGGAC	2 cut(s)	19, 172
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	5, 404
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	2 cut(s)	5, 404
BsrDI	GCAATG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	1 cut(s)	150
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	188, 238
BstACI	GRCGYC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 275, 284
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	76, 403
BstXI	CCANNNNNNTGG	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	5, 404
BtsIMutI	CAGTG	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	100, 396
CseI	GACGC	1 cut(s)	3
CviAII	CATG	2 cut(s)	317, 406
CviJI	RGCY	7 cut(s)	5, 143, 177, 197, 332, 404, 416
CviKI_1	RGCY	7 cut(s)	5, 143, 177, 197, 332, 404, 416
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	100, 396
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	2 cut(s)	320, 409
FaiI	YATR	7 cut(s)	50, 75, 266, 296, 318, 341, 407
FaqI	GGGAC	2 cut(s)	19, 172
FatI	CATG	2 cut(s)	316, 405
Fnu4HI	GCNGC	2 cut(s)	65, 417
Fsp4HI	GCNGC	2 cut(s)	65, 417
GluI	GCNGC	2 cut(s)	65, 417
GsaI	CCCAGC	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	5, 404
HgaI	GACGC	1 cut(s)	3
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	320, 409
HinfI	GANTC	1 cut(s)	160
HphI	GGTGA	2 cut(s)	203, 217
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	188, 238
HpyCH4V	TGCA	3 cut(s)	247, 287, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 275, 284
HpyF3I	CTNAG	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	320, 409
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	4 cut(s)	116, 151, 233, 329
Lsp1109I	GCAGC	2 cut(s)	76, 403
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	2 cut(s)	102, 437
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	108, 433
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	3 cut(s)	4, 206, 361
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	436
MslI	CAYNNNNRTG	2 cut(s)	321, 338
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	11, 275, 284
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	2 cut(s)	320, 409
NmuCI	GTSAC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	66, 418
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PshAI	GACNNNNGTC	1 cut(s)	390
PspFI	CCCAGC	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	100, 396
RseI	CAYNNNNRTG	2 cut(s)	321, 338
SaqAI	TTAA	1 cut(s)	436
SatI	GCNGC	2 cut(s)	65, 417
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	2 cut(s)	100, 396
SchI	GAGTC	1 cut(s)	154
SetI	ASST	2 cut(s)	179, 418
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	100, 396
SmiMI	CAYNNNNRTG	2 cut(s)	321, 338
Sse9I	AATT	2 cut(s)	108, 433
SsiI	CCGC	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	188, 238
TaqI	TCGA	2 cut(s)	9, 17
TaqII	GACCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	108, 433
Tru1I	TTAA	1 cut(s)	436
Tru9I	TTAA	1 cut(s)	436
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	2 cut(s)	64, 416
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	2 cut(s)	100, 396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.