RchiOBHm_Chr5g0044131

Belongs to the peroxisomal membrane protein PXMP2 4 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
39337535 .. 39337891
357 bp
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UTR
Exon/CDS
Intron
PRQ32234

Sequence Viewer

Length: 216 bp
ATGCATGCTCTTGGAGCTGGAGGCCATGGTGGGTTCTGGGGTTGGGACTCTCTACCAAAGAAAACCCACAACAAAGAAAGCGATTTGATAGTTCTGGGTTTTAGGTTCTTGGGTAGTTTTCCATTATGGATTTTGATTTGGAAATTGGTTGTTGTGAGCTTCCAGGTGAAGTATTCGCAAGAGCTGGACAACTACACCAAGTGCTTATTAGTATGA

Protein Analysis

71

Amino Acids

8.09

Weight (kDa)

8.89

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0030140)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0044131
rosa_samantha Rh5AG508100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 201
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 17, 159, 184
AluI AGCT 3 cut(s) 17, 159, 184
AoxI GGCC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 25
BshFI GGCC 1 cut(s) 24
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 25
BspANI GGCC 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 6
CviAII CATG 2 cut(s) 5, 26
CviJI RGCY 4 cut(s) 17, 24, 159, 184
CviKI_1 RGCY 4 cut(s) 17, 24, 159, 184
DraIII CACNNNGTG 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 25
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 2 cut(s) 8, 29
FaiI YATR 4 cut(s) 6, 27, 127, 214
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 4, 25
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 24
Hin1II CATG 2 cut(s) 8, 29
HinfI GANTC 1 cut(s) 47
HphI GGTGA 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 2 cut(s) 8, 29
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 6 cut(s) 3, 22, 80, 149, 170, 176
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 1 cut(s) 14
Mph1103I ATGCAT 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 14
NcoI CCATGG 1 cut(s) 25
NlaIII CATG 2 cut(s) 8, 29
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 164
SetI ASST 5 cut(s) 19, 107, 161, 168, 186
SphI GCATGC 1 cut(s) 8
Sse9I AATT 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 25
TasI AATT 1 cut(s) 143
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.