Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0030140

Physical Location & Seq

Genomic Coordinates Forward (+)

85861238 .. 85871254

Gene Structure 10017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG508100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGATATTTGTTTCATTTTGAGAATGCTCTTGGAGGTGGAGGCCATGGCGGGTTCTGGGGTTGGGACTCTCTACCAAAGAAAACCCACAACAAAGAAAGCGATTTGATAGTTCTGGGTTTTAGGTTCTTGGGTAGTTTTCCATTATGGATTTTGATTCGGAAATTGGTTGTTGTGAGCTTCCAGGTGAGGACTAATGCTCGAATTGTGGAAGGAGATCCAGGTAAGGTAACTTACAAGGCACCCAATGAGAATGTACAAGCCCAACCTGGTGAGAATGTAGAAGCCCAGCCTCAGCCTATGCATATGCCTCCCCAACCAGAGCCTATGCCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0030154 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0044424 GO:0044444 GO:0044464 GO:0048066 GO:0048869 GO:0050896 GO:0050931 GO:0050935 GO:0051716 GO:0070887 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

112

Amino Acids

12.57

Weight (kDa)

8.11

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030140)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044131
rosa_samantha	Rh5AG508100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	258
AjnI	CCWGG	3 cut(s)	183, 220, 268
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	199, 284
BanI	GGYRCC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	294
BciT130I	CCWGG	3 cut(s)	185, 222, 270
Bme1390I	CCNGG	3 cut(s)	185, 222, 270
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	3 cut(s)	185, 222, 270
Bpu10I	CCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	46
BseBI	CCWGG	3 cut(s)	185, 222, 270
BseDI	CCNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	308
BseYI	CCCAGC	1 cut(s)	288
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	45
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	3 cut(s)	185, 222, 270
BstAUI	TGTACA	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstNI	CCWGG	3 cut(s)	185, 222, 270
BstSCI	CCNGG	3 cut(s)	183, 220, 268
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	46
CsiI	ACCWGGT	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	7 cut(s)	45, 180, 263, 287, 292, 298, 325
CviKI_1	RGCY	7 cut(s)	45, 180, 263, 287, 292, 298, 325
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	183, 220, 268
EcoT14I	CCWWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	50
FaiI	YATR	6 cut(s)	48, 148, 302, 306, 308, 329
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	46
FauI	CCCGC	1 cut(s)	44
FauNDI	CATATG	1 cut(s)	306
GsaI	CCCAGC	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	2 cut(s)	68, 157
HphI	GGTGA	2 cut(s)	199, 284
Hpy188I	TCNGA	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	304
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	217
MabI	ACCWGGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	2 cut(s)	164, 204
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	5 cut(s)	29, 35, 183, 303, 321
Mph1103I	ATGCAT	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	185, 222, 270
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	3 cut(s)	185, 222, 270
NcoI	CCATGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	243
NsiI	ATGCAT	1 cut(s)	306
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	3 cut(s)	183, 220, 268
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	3 cut(s)	183, 220, 268
PspN4I	GGNNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	185, 222, 270
SetI	ASST	7 cut(s)	40, 128, 182, 189, 226, 231, 271
SexAI	ACCWGGT	1 cut(s)	268
Sse9I	AATT	2 cut(s)	164, 204
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	3 cut(s)	183, 220, 268
StyI	CCWWGG	1 cut(s)	46
TaqI	TCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	164, 204
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.