RchiOBHm_Chr5g0046321

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
42361901 .. 42364077
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32432

Sequence Viewer

Length: 363 bp
ATGAAAGCTATCACCCCAGCAGTCCTTGATAACAAGGGTCATTTGGGAATCATCTTTGATACAGACGTTGATAGATCTGCTGCTGTGGACTCTACTGGCATTGAGTTCAAACAGAATCTTCCATATATTGTTCTTGAGGAAGCAAGAATTCTTCTTATTGCATGCATTACGGATGACAATTACATTATTTTCTCTCATTATACTCGTATATATCCTTCTCCCCTCATCAGTTTGACCTTTGGTGCAAACAACGCAGCCTATGAAGATCAAGCGTCATCTTCATTTGGAGGGGTTGACAAGCTCGATCAACACATGTCATTATCCTATTTGAGCTCCACTTCATGTTTCTGCAAATGCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.26

Weight (kDa)

4.73

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025027)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0046321
rosa_roxburghii Rroxscaffold_1G00035500
rosa_samantha Rh5AG307400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 147
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 3 cut(s) 8, 301, 333
AluI AGCT 3 cut(s) 8, 301, 333
Alw21I GWGCWC 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 80, 254
ApoI RAATTY 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 4
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BanII GRGCYC 1 cut(s) 335
BarI GAAGNNNNNNTAC 2 cut(s) 199, 231
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 2 cut(s) 67, 266
BglII AGATCT 1 cut(s) 74
BisI GCNGC 2 cut(s) 81, 255
BlsI GCNGC 2 cut(s) 82, 256
BpuEI CTTGAG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 67, 266
BseYI CCCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 74, 265, 304
BsrI ACTGG 1 cut(s) 100
BssMI GATC 3 cut(s) 74, 265, 304
BstC8I GCNNGC 1 cut(s) 163
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 3 cut(s) 77, 268, 307
BstMBI GATC 3 cut(s) 74, 265, 304
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNSI RCATGY 2 cut(s) 165, 316
BstV1I GCAGC 2 cut(s) 67, 266
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 163
CseI GACGC 1 cut(s) 261
CviAII CATG 3 cut(s) 162, 313, 342
CviJI RGCY 4 cut(s) 8, 257, 301, 333
CviKI_1 RGCY 4 cut(s) 8, 257, 301, 333
DpnI GATC 3 cut(s) 76, 267, 306
DpnII GATC 3 cut(s) 74, 265, 304
Ecl136II GAGCTC 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 335
FaeI CATG 3 cut(s) 165, 316, 345
FaiI YATR 9 cut(s) 124, 126, 163, 201, 209, 211, 261, 314, 343
FatI CATG 3 cut(s) 161, 312, 341
Fnu4HI GCNGC 2 cut(s) 81, 255
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 81, 255
GluI GCNGC 2 cut(s) 81, 255
GsaI CCCAGC 1 cut(s) 20
HgaI GACGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 165, 316, 345
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 3 cut(s) 48, 89, 115
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 88, 295
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 88, 295
HpyAV CCTTC 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 4 cut(s) 161, 165, 245, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 3 cut(s) 165, 316, 345
Kzo9I GATC 3 cut(s) 74, 265, 304
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 3 cut(s) 30, 81, 343
Lsp1109I GCAGC 2 cut(s) 67, 266
MaeII ACGT 1 cut(s) 66
MalI GATC 3 cut(s) 76, 267, 306
MboI GATC 3 cut(s) 74, 265, 304
MboII GAAGA 4 cut(s) 110, 143, 270, 275
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 2 cut(s) 147, 178
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 3 cut(s) 130, 233, 281
Mph1103I ATGCAT 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 3 cut(s) 74, 265, 304
NlaIII CATG 3 cut(s) 165, 316, 345
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 2 cut(s) 165, 316
PaeI GCATGC 1 cut(s) 165
PciI ACATGT 1 cut(s) 312
PfeI GAWTC 2 cut(s) 48, 115
PkrI GCNGC 2 cut(s) 82, 256
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PscI ACATGT 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 16
PsuI RGATCY 1 cut(s) 74
SacI GAGCTC 1 cut(s) 335
SatI GCNGC 2 cut(s) 81, 255
Sau3AI GATC 3 cut(s) 74, 265, 304
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 1 cut(s) 335
SetI ASST 5 cut(s) 10, 69, 239, 303, 335
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SphI GCATGC 1 cut(s) 165
Sse9I AATT 2 cut(s) 147, 178
SstI GAGCTC 1 cut(s) 335
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 303
TasI AATT 2 cut(s) 147, 178
TfiI GAWTC 2 cut(s) 48, 115
TseI GCWGC 2 cut(s) 80, 254
TspDTI ATGAA 4 cut(s) 17, 270, 276, 330
TspGWI ACGGA 1 cut(s) 185
XapI RAATTY 1 cut(s) 147
XceI RCATGY 2 cut(s) 165, 316
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.