Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030233

Physical Location & Seq

Genomic Coordinates Reverse (-)

44816588 .. 44817453

Gene Structure 866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32598

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATTCTCCCCGCCTGTACAGCAACCCCAATTCAACTTCCCAAACAACACCCACTCACCACTACTTCACACCCATCTCAGTCCACCTCTCCTAATCCAAAACACGACAAGAAACACTCCGTTTCGCTGAGAAATAGGAATGAAAGTATAGACCAAACTGTGTTGTGGACCTCTTCTATATCCCAACGCTGCCGAAGTGGTCAGCTATCTCAAGCTGTTTCACAGTTCATCCAAATGAGACAAGCCGGGGTTGAACCAAACCACATCACATTCGTTACACTCTTCTCCGGCTGTGCTCACTTTCCAGCTAAAGCACCATTGTTTGGGCCCTCGCTTCATGCTTATGCGTCTAAACTGGGCTTAGACAGGACTAATGTGATGGTGGGGACGGCACTAGTTGATATGTATGCAAAGTCTGGTCGGGTGGAGCTTGCTAGATTGGTTTTTAGTGGGATGGAGGTGAAGAATTCAATGTCTTGGAATACTATGATTGATGGGTACATGAGAAATGGAAATGTGAGGGATGCAGTTGAGAGACGCCGGTTTGAGCAAGCGCTGGAGTGGTTTCGTGAGATGCAGGTGTCCCGTGTGGAACCGGACTATGTGACTATAATTGCTGTGATTGCTGCTTGTGCTGATTTGGGGACTCTTGGTTTAGGCTTGTGGATAAACCGGTTTGTTATGAAGCAAGACTTTAGACACAATGTGTTTGGCTCCAAAACCAGCTGGTGTGCAAACAGTCTCTTTTGGGCGAGTGGTTGCGCAGGCGTGCCAGCACCGCGGGGTGCAGTCGTTGGGGTAGTCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

269

Amino Acids

29.71

Weight (kDa)

9.62

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	53 - 100	9.4e-10	PPR repeat family
PPR_2	PF13041	156 - 212	4.8e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030233)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0048171
rosa_samantha	Rh5BG326500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	568
Acc16I	TGCGCA	1 cut(s)	763
Acc36I	ACCTGC	1 cut(s)	568
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccII	CGCG	1 cut(s)	781
AciI	CCGC	3 cut(s)	12, 779, 781
AcsI	RAATTY	1 cut(s)	466
AcyI	GRCGYC	1 cut(s)	538
AdeI	CACNNNGTG	1 cut(s)	706
AfaI	GTAC	2 cut(s)	19, 500
AfeI	AGCGCT	1 cut(s)	555
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgeI	ACCGGT	1 cut(s)	672
AgsI	TTSAA	3 cut(s)	35, 254, 471
AhlI	ACTAGT	1 cut(s)	394
AluBI	AGCT	5 cut(s)	205, 215, 308, 430, 726
AluI	AGCT	5 cut(s)	205, 215, 308, 430, 726
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	3 cut(s)	232, 529, 746
Aor51HI	AGCGCT	1 cut(s)	555
AoxI	GGCC	1 cut(s)	326
ApaI	GGGCCC	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	189, 626
ApoI	RAATTY	1 cut(s)	466
AsiGI	ACCGGT	1 cut(s)	672
AspLEI	GCGC	2 cut(s)	556, 764
AspS9I	GGNCC	3 cut(s)	168, 326, 327
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	49, 472
AvaII	GGWCC	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	176, 613
BccI	CCATC	4 cut(s)	82, 373, 448, 488
BceAI	ACGGC	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	3 cut(s)	232, 529, 746
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	2 cut(s)	395, 435
BfoI	RGCGCY	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	568
BisI	GCNGC	2 cut(s)	190, 627
BlsI	GCNGC	2 cut(s)	191, 628
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	3 cut(s)	168, 326, 327
BmiI	GGNNCC	3 cut(s)	328, 594, 715
BmrFI	CCNGG	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	514, 564
BmuI	ACTGGG	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	246, 779
BsaWI	WCCGGW	2 cut(s)	595, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse118I	RCCGGY	2 cut(s)	540, 672
Bse1I	ACTGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	246, 779
BseGI	GGATG	3 cut(s)	228, 459, 529
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	92, 119
BseNI	ACTGG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	176, 613
BsgI	GTGCAG	1 cut(s)	807
Bsh1236I	CGCG	1 cut(s)	781
BshFI	GGCC	1 cut(s)	328
BshTI	ACCGGT	1 cut(s)	672
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	5 cut(s)	246, 288, 541, 596, 673
BslFI	GGGAC	4 cut(s)	400, 568, 658, 788
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	3 cut(s)	232, 529, 746
BsmBI	CGTCTC	1 cut(s)	529
BsmFI	GGGAC	4 cut(s)	400, 568, 658, 788
BsnI	GGCC	1 cut(s)	328
Bsp120I	GGGCCC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	298, 330
Bsp1407I	TGTACA	1 cut(s)	17
BspACI	CCGC	3 cut(s)	12, 779, 781
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	91, 120
BspFNI	CGCG	1 cut(s)	781
BspLI	GGNNCC	3 cut(s)	328, 594, 715
BspMI	ACCTGC	1 cut(s)	568
BsrFI	RCCGGY	2 cut(s)	540, 672
BsrGI	TGTACA	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	2 cut(s)	540, 672
BssECI	CCNNGG	2 cut(s)	246, 779
BssNI	GRCGYC	1 cut(s)	538
Bst4CI	ACNGT	3 cut(s)	160, 225, 740
Bst6I	CTCTTC	2 cut(s)	178, 287
BstACI	GRCGYC	1 cut(s)	538
BstAUI	TGTACA	1 cut(s)	17
BstC8I	GCNNGC	5 cut(s)	432, 552, 766, 770, 774
BstDEI	CTNAG	3 cut(s)	78, 128, 361
BstDSI	CCRYGG	1 cut(s)	779
BstF5I	GGATG	3 cut(s)	228, 459, 529
BstFNI	CGCG	1 cut(s)	781
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	2 cut(s)	556, 764
BstMAI	GTCTC	3 cut(s)	232, 529, 746
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 623, 632, 778
BstSCI	CCNGG	1 cut(s)	245
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	781
BstV1I	GCAGC	2 cut(s)	176, 613
BsuRI	GGCC	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	779
BtsCI	GGATG	3 cut(s)	228, 459, 529
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	5 cut(s)	432, 552, 766, 770, 774
CfoI	GCGC	2 cut(s)	556, 764
Cfr10I	RCCGGY	2 cut(s)	540, 672
Cfr13I	GGNCC	3 cut(s)	168, 326, 327
Cfr42I	CCGCGG	1 cut(s)	782
CseI	GACGC	2 cut(s)	336, 546
Csp6I	GTAC	2 cut(s)	18, 499
CspAI	ACCGGT	1 cut(s)	672
CviAII	CATG	2 cut(s)	338, 502
CviQI	GTAC	2 cut(s)	18, 499
DdeI	CTNAG	3 cut(s)	78, 128, 361
DraIII	CACNNNGTG	1 cut(s)	706
Eam1104I	CTCTTC	2 cut(s)	178, 287
EarI	CTCTTC	2 cut(s)	178, 287
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	168
Eco47III	AGCGCT	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	529
FaeI	CATG	2 cut(s)	341, 505
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	4 cut(s)	400, 568, 658, 788
FatI	CATG	2 cut(s)	337, 501
FauI	CCCGC	2 cut(s)	19, 774
Fnu4HI	GCNGC	2 cut(s)	190, 627
FokI	GGATG	3 cut(s)	215, 466, 536
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	190, 627
FspBI	CTAG	2 cut(s)	395, 435
FspI	TGCGCA	1 cut(s)	763
GlaI	GCGC	2 cut(s)	555, 763
GluI	GCNGC	2 cut(s)	190, 627
GsuI	CTGGAG	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	5 cut(s)	246, 288, 541, 596, 673
HgaI	GACGC	2 cut(s)	336, 546
HhaI	GCGC	2 cut(s)	556, 764
Hin1I	GRCGYC	1 cut(s)	538
Hin1II	CATG	2 cut(s)	341, 505
Hin6I	GCGC	2 cut(s)	554, 762
HinP1I	GCGC	2 cut(s)	554, 762
HinfI	GANTC	2 cut(s)	4, 646
HpaII	CCGG	5 cut(s)	246, 288, 541, 596, 673
HphI	GGTGA	2 cut(s)	49, 472
Hpy166II	GTNNAC	2 cut(s)	84, 168
Hpy188III	TCNNGA	1 cut(s)	569
Hpy8I	GTNNAC	2 cut(s)	84, 168
HpyCH4III	ACNGT	3 cut(s)	160, 225, 740
HpyCH4V	TGCA	5 cut(s)	410, 527, 577, 734, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 623, 632, 778
HpyF3I	CTNAG	3 cut(s)	78, 128, 361
Hsp92I	GRCGYC	1 cut(s)	538
Hsp92II	CATG	2 cut(s)	341, 505
HspAI	GCGC	2 cut(s)	554, 762
KspI	CCGCGG	1 cut(s)	782
LmnI	GCTCC	2 cut(s)	427, 719
Lsp1109I	GCAGC	2 cut(s)	176, 613
LweI	GCATC	2 cut(s)	514, 564
MaeI	CTAG	2 cut(s)	395, 435
MaeIII	GTNAC	2 cut(s)	274, 604
MboII	GAAGA	3 cut(s)	165, 274, 475
MhlI	GDGCHC	2 cut(s)	298, 330
MluCI	AATT	3 cut(s)	30, 466, 612
MlyI	GAGTC	1 cut(s)	640
MnlI	CCTC	5 cut(s)	97, 181, 340, 451, 513
MslI	CAYNNNNRTG	2 cut(s)	233, 342
MspA1I	CMGCKG	2 cut(s)	726, 781
MspI	CCGG	5 cut(s)	246, 288, 541, 596, 673
MspR9I	CCNGG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	781
MwoI	GCNNNNNNNGC	4 cut(s)	20, 623, 632, 778
NciI	CCSGG	1 cut(s)	247
NlaIII	CATG	2 cut(s)	341, 505
NlaIV	GGNNCC	3 cut(s)	328, 594, 715
NmuCI	GTSAC	1 cut(s)	604
NsbI	TGCGCA	1 cut(s)	763
PaqCI	CACCTGC	1 cut(s)	568
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	323
PinAI	ACCGGT	1 cut(s)	672
PkrI	GCNGC	2 cut(s)	191, 628
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
PspN4I	GGNNCC	3 cut(s)	328, 594, 715
PspOMI	GGGCCC	1 cut(s)	326
PspPI	GGNCC	3 cut(s)	168, 326, 327
PvuII	CAGCTG	1 cut(s)	726
RsaI	GTAC	2 cut(s)	19, 500
RsaNI	GTAC	2 cut(s)	18, 499
RseI	CAYNNNNRTG	2 cut(s)	233, 342
SacII	CCGCGG	1 cut(s)	782
SatI	GCNGC	2 cut(s)	190, 627
Sau96I	GGNCC	3 cut(s)	168, 326, 327
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	2 cut(s)	298, 330
SetI	ASST	9 cut(s)	89, 173, 207, 217, 310, 432, 462, 582, 728
SfaNI	GCATC	2 cut(s)	514, 564
Sfr303I	CCGCGG	1 cut(s)	782
SgrBI	CCGCGG	1 cut(s)	782
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	2 cut(s)	233, 342
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
SpeI	ACTAGT	1 cut(s)	394
Sse9I	AATT	3 cut(s)	30, 466, 612
SsiI	CCGC	3 cut(s)	12, 779, 781
SspMI	CTAG	2 cut(s)	395, 435
StyD4I	CCNGG	1 cut(s)	245
TaaI	ACNGT	3 cut(s)	160, 225, 740
TasI	AATT	3 cut(s)	30, 466, 612
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	4
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	2 cut(s)	189, 626
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	4 cut(s)	156, 217, 326, 698
TspGWI	ACGGA	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	466
XspI	CTAG	2 cut(s)	395, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.