Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0030233

Physical Location & Seq

Genomic Coordinates Reverse (-)

44643627 .. 44646922

Gene Structure 3296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG326500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGCATATAGGGGCATGCTACGGTTTGACCATTCTTGACCTTCTTGGAAAGCTTGGCACTGTCGATGTCAATGAAGTTGTTTCGGAGACAATGATTCTCCCCGCCTGTACAGCAACCCCAATTCAACTTCCCAAACAACACCCACTCACCACTACTTCACACCCATCTCAGTCCACCTCTCCTAATCCAAAACACGACAAGAAACACTCCGTTTCGCTGAGAAATAGGAATGAAAGTATAGACCAAACTGTGTTGTGGACCTCTTCTATATCCCAACGCTGCCGAAGTGGTCAGCTATCTCAAGCTGTTTCACAGTTCATCCAAATGAGACAAGCCGGGGTTGAACCAAACCACATCACATTCGTTACACTCTTCTCCGGCTGTGCTCACTTTCCAGCTAAAGCACCATTGTTTGGGCCCTCGCTTCATGCTTATGCGTCTAAACTGGGCTTAGACAGGACTAATGTGATGGTGGGGACGGCACTAGTTGATATGTATGCAAAGTCTGGTCGGGTGGAGCTTGCTAGATTGGTTTTTAGTGGGATGGAGGTGAAGAATTCAATGTCTTGGAATACTATGATTGATGGGTACATGAGAAATGGAAATGTGAGGGATGCAGTTGAGGTGTTTGATGAAATGCCCGAGAGACGTGGACCGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

221

Amino Acids

24.3

Weight (kDa)

8.38

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	84 - 131	6.8e-10	PPR repeat family
PPR_2	PF13041	187 - 217	1.4e-09	PPR repeat family
PPR_1	PF12854	187 - 214	1.2e-08	PPR repeat
PPR	PF01535	190 - 217	4.6e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030233)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0048171
rosa_samantha	Rh5BG326500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	416
AciI	CCGC	2 cut(s)	105, 659
AcsI	RAATTY	1 cut(s)	559
AfaI	GTAC	2 cut(s)	112, 593
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	128, 347, 564
AhlI	ACTAGT	1 cut(s)	487
AjiI	CACGTC	1 cut(s)	653
AluBI	AGCT	5 cut(s)	55, 298, 308, 401, 523
AluI	AGCT	5 cut(s)	55, 298, 308, 401, 523
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	3 cut(s)	83, 325, 643
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	1 cut(s)	419
ApaI	GGGCCC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	559
AspS9I	GGNCC	4 cut(s)	261, 419, 420, 656
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	142, 565
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	2 cut(s)	261, 656
BaeGI	GKGCMC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	4 cut(s)	175, 466, 541, 581
BceAI	ACGGC	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	3 cut(s)	83, 325, 643
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	2 cut(s)	488, 528
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	2 cut(s)	261, 656
BmeT110I	CYCGRG	1 cut(s)	644
BmgBI	CACGTC	1 cut(s)	653
BmgT120I	GGNCC	4 cut(s)	261, 419, 420, 656
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	3 cut(s)	321, 552, 622
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	185, 212
BseNI	ACTGG	1 cut(s)	453
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	2 cut(s)	339, 381
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	3 cut(s)	83, 325, 643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	421
BsoBI	CYCGRG	1 cut(s)	644
Bsp120I	GGGCCC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	391, 423
Bsp1407I	TGTACA	1 cut(s)	110
BspACI	CCGC	2 cut(s)	105, 659
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	2 cut(s)	184, 213
BspLI	GGNNCC	1 cut(s)	421
BsrGI	TGTACA	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	26, 64, 253, 318
Bst6I	CTCTTC	2 cut(s)	271, 380
BstAUI	TGTACA	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	19, 525
BstDEI	CTNAG	3 cut(s)	171, 221, 454
BstF5I	GGATG	3 cut(s)	321, 552, 622
BstMAI	GTCTC	3 cut(s)	83, 325, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	421
BtrI	CACGTC	1 cut(s)	653
BtsCI	GGATG	3 cut(s)	321, 552, 622
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	19, 525
Cfr13I	GGNCC	4 cut(s)	261, 419, 420, 656
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	111, 592
CviAII	CATG	3 cut(s)	18, 431, 595
CviJI	RGCY	9 cut(s)	55, 298, 308, 338, 384, 401, 421, 453, 523
CviKI_1	RGCY	9 cut(s)	55, 298, 308, 338, 384, 401, 421, 453, 523
CviQI	GTAC	2 cut(s)	111, 592
DdeI	CTNAG	3 cut(s)	171, 221, 454
Eam1104I	CTCTTC	2 cut(s)	271, 380
EarI	CTCTTC	2 cut(s)	271, 380
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	261, 656
Eco88I	CYCGRG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	3 cut(s)	21, 434, 598
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	3 cut(s)	17, 430, 594
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	3 cut(s)	308, 559, 629
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	2 cut(s)	488, 528
GluI	GCNGC	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	2 cut(s)	339, 381
HgaI	GACGC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	21, 434, 598
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	339, 381
HphI	GGTGA	2 cut(s)	142, 565
Hpy166II	GTNNAC	3 cut(s)	177, 261, 656
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	3 cut(s)	177, 261, 656
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	4 cut(s)	26, 64, 253, 318
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	2 cut(s)	503, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	171, 221, 454
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	3 cut(s)	21, 434, 598
LmnI	GCTCC	2 cut(s)	4, 520
LpnPI	CCDG	7 cut(s)	121, 352, 394, 411, 434, 445, 495
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	488, 528
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	258, 367, 568
MhlI	GDGCHC	2 cut(s)	391, 423
MluCI	AATT	2 cut(s)	123, 559
MnlI	CCTC	6 cut(s)	190, 274, 433, 544, 606, 619
MslI	CAYNNNNRTG	2 cut(s)	326, 435
MspI	CCGG	2 cut(s)	339, 381
MspR9I	CCNGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	340
NlaIII	CATG	3 cut(s)	21, 434, 598
NlaIV	GGNNCC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	21
PaeI	GCATGC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	421
PspOMI	GGGCCC	1 cut(s)	419
PspPI	GGNCC	4 cut(s)	261, 419, 420, 656
RsaI	GTAC	2 cut(s)	112, 593
RsaNI	GTAC	2 cut(s)	111, 592
RseI	CAYNNNNRTG	2 cut(s)	326, 435
SatI	GCNGC	1 cut(s)	283
Sau96I	GGNCC	4 cut(s)	261, 419, 420, 656
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	2 cut(s)	391, 423
SfaNI	GCATC	1 cut(s)	607
SinI	GGWCC	2 cut(s)	261, 656
SmiMI	CAYNNNNRTG	2 cut(s)	326, 435
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SpeI	ACTAGT	1 cut(s)	487
SphI	GCATGC	1 cut(s)	21
Sse9I	AATT	2 cut(s)	123, 559
SsiI	CCGC	2 cut(s)	105, 659
SspMI	CTAG	2 cut(s)	488, 528
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	4 cut(s)	26, 64, 253, 318
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	123, 559
TatI	WGTACW	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	97
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	5 cut(s)	90, 249, 310, 419, 651
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	261, 656
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	21
XspI	CTAG	2 cut(s)	488, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.