RchiOBHm_Chr5g0049421

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
47004241 .. 47004489
249 bp
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UTR
Exon/CDS
Intron
PRQ32708

Sequence Viewer

Length: 192 bp
ATGGTGGAAGGTTCCATTGGAGGTGTTGAAGTATTGTGTTTTCAAGGAAGGAGATTGTATAGGATGAAGCGAAAGAGCCAGAGCTTGCAACTCAAAGTTGCTCCGGATGATAAGGTTAGTTGTTGCGATTCATTATTAGCTAATGCGTTTATAGTTGTTCTTACTTCATGTTTATTCGGTGCCGGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.82

Weight (kDa)

8.86

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030267)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0049421
rosa_samantha Rh6AG475100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 103
AgsI TTSAA 2 cut(s) 29, 44
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 2 cut(s) 84, 140
AluI AGCT 2 cut(s) 84, 140
Aor13HI TCCGGA 1 cut(s) 103
BanI GGYRCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 13, 181
BsaWI WCCGGW 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 182
BseAI TCCGGA 1 cut(s) 103
BseGI GGATG 2 cut(s) 69, 112
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 104, 183
Bsp13I TCCGGA 1 cut(s) 103
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 13, 181
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 86, 184
BstF5I GGATG 2 cut(s) 69, 112
BtsCI GGATG 2 cut(s) 69, 112
Cac8I GCNNGC 2 cut(s) 86, 184
Cfr10I RCCGGY 1 cut(s) 182
CviAII CATG 1 cut(s) 168
CviJI RGCY 3 cut(s) 78, 84, 140
CviKI_1 RGCY 3 cut(s) 78, 84, 140
FaeI CATG 1 cut(s) 171
FaiI YATR 5 cut(s) 60, 152, 169, 188, 190
FatI CATG 1 cut(s) 167
FauNDI CATATG 1 cut(s) 188
FokI GGATG 2 cut(s) 76, 119
HapII CCGG 2 cut(s) 104, 183
Hin1II CATG 1 cut(s) 171
HinfI GANTC 1 cut(s) 128
HpaII CCGG 2 cut(s) 104, 183
Hpy188III TCNNGA 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 88
Hsp92II CATG 1 cut(s) 171
Kpn2I TCCGGA 1 cut(s) 103
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 2 cut(s) 92, 117
MnlI CCTC 1 cut(s) 14
MroI TCCGGA 1 cut(s) 103
MroNI GCCGGC 1 cut(s) 182
MspI CCGG 2 cut(s) 104, 183
NaeI GCCGGC 1 cut(s) 184
NdeI CATATG 1 cut(s) 188
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 2 cut(s) 13, 181
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 13, 181
SetI ASST 5 cut(s) 13, 25, 86, 117, 142
SgeI CNNG 5 cut(s) 56, 91, 97, 116, 180
TfiI GAWTC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 80, 120, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.