Rh6AG475100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
65664617 .. 65665803
1187 bp
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UTR
Exon/CDS
Intron
Rh6AG475100.1

Sequence Viewer

Length: 180 bp
ATGGCTTTAGTTATCTTAGGAAGGAGATTGTATAGGATGAAGCGAAAGAGCCAGAGCTTGCAACTCAAAGTTGCTCCGGATGATAAGTTCAAAATCCGAGATTATGACTATGTGGGTGTTTTACGGGTCAATAGAGGCGGCAAGTTTGAAATTTTACCGCTTGGCCTATTTAGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.95

Weight (kDa)

10.73

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030267)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0049421
rosa_samantha Rh6AG475100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 2 cut(s) 138, 158
AcsI RAATTY 1 cut(s) 150
AgsI TTSAA 2 cut(s) 91, 149
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 150
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 76
BseAI TCCGGA 1 cut(s) 76
BseGI GGATG 2 cut(s) 42, 85
BshFI GGCC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 77
BsnI GGCC 1 cut(s) 165
Bsp13I TCCGGA 1 cut(s) 76
BspACI CCGC 2 cut(s) 138, 158
BspANI GGCC 1 cut(s) 165
BspEI TCCGGA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 42, 85
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 42, 85
Cac8I GCNNGC 1 cut(s) 59
CviJI RGCY 5 cut(s) 5, 51, 57, 165, 175
CviKI_1 RGCY 5 cut(s) 5, 51, 57, 165, 175
DdeI CTNAG 1 cut(s) 16
FaiI YATR 3 cut(s) 33, 105, 111
Fnu4HI GCNGC 1 cut(s) 139
FokI GGATG 2 cut(s) 49, 92
Fsp4HI GCNGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 139
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 77
HpaII CCGG 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 76
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 2 cut(s) 65, 90
MluCI AATT 1 cut(s) 150
MnlI CCTC 1 cut(s) 128
MroI TCCGGA 1 cut(s) 76
MspI CCGG 1 cut(s) 77
PkrI GCNGC 1 cut(s) 140
SatI GCNGC 1 cut(s) 139
SetI ASST 1 cut(s) 59
SgeI CNNG 7 cut(s) 64, 70, 89, 110, 137, 154, 173
Sse9I AATT 1 cut(s) 150
SsiI CCGC 2 cut(s) 138, 158
TasI AATT 1 cut(s) 150
TauI GCSGC 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 53
XapI RAATTY 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.