RchiOBHm_Chr5g0050771

chromodomain-helicase-DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0025049
Physical Location & Seq
Forward (+)
51464640 .. 51465014
375 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32829

Sequence Viewer

Length: 375 bp
ATGACCACGCGCTTGTGGAACTTTGTTTCTACATTTTCAAACCTGTCTGGAGAGAGACTTCACCAAATATATGCGAAACTTAAACAAGAGCAGGATGAGGAACCTGGTCCTTCCCACATCAATGGCTCTGCATCTGGTCCTTTTGGCAGAGACAGTGACCCTACTTCCTTCTCCCATCTTGCTGAGAGGCAAAGAGGGTACAAAAGTGTTAATAACCAAACATTTGAACCTCTGAAGGGTTCTGATACAGCTAAATTTGAAGCATGGAAACGAAGGAGAAGAGGGGAGACTGATAGTCCATCTCAAAGACCTTTGAGTAATGGTTCTCGGCCAGCTGATCCAAACTCGATGGGAATTCTTGGTGCAGTAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo DUF4208 Helicase_C SLIDE SNF2_N

Protein Analysis

124

Amino Acids

13.81

Weight (kDa)

9.51

Isoelectric Point (pI)

57.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025049)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0050771
rosa_samantha Rh5BG345300 Rh5DG358500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 329
AcsI RAATTY 2 cut(s) 254, 354
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 39, 227, 260
AhdI GACNNNNNGTC 1 cut(s) 294
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 2 cut(s) 251, 335
AluI AGCT 2 cut(s) 251, 335
Alw26I GTCTC 3 cut(s) 49, 144, 281
AlwI GGATC 1 cut(s) 332
AoxI GGCC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 254, 354
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 107, 137
AsuHPI GGTGA 1 cut(s) 53
AvaII GGWCC 2 cut(s) 107, 137
BaeI ACNNNNGTAYC 2 cut(s) 190, 223
BccI CCATC 3 cut(s) 183, 307, 343
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 3 cut(s) 49, 144, 281
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 107, 137
BmeRI GACNNNNNGTC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 107, 137
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 3 cut(s) 49, 144, 281
BsnI GGCC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 337
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 332
BssMI GATC 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 3 cut(s) 49, 144, 281
BstMBI GATC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstUI CGCG 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 122
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 107, 137
CsiI ACCWGGT 1 cut(s) 103
Csp6I GTAC 1 cut(s) 199
CviAII CATG 1 cut(s) 264
CviJI RGCY 4 cut(s) 126, 251, 331, 335
CviKI_1 RGCY 4 cut(s) 126, 251, 331, 335
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
DriI GACNNNNNGTC 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 274
Eam1105I GACNNNNNGTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 274
Eco47I GGWCC 2 cut(s) 107, 137
Eco57I CTGAAG 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 267
FaiI YATR 4 cut(s) 70, 72, 265, 373
FatI CATG 1 cut(s) 263
FokI GGATG 1 cut(s) 107
GlaI GCGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 331
HhaI GCGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HphI GGTGA 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 234, 244
Hpy188III TCNNGA 1 cut(s) 48
HpyAV CCTTC 4 cut(s) 120, 178, 229, 267
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 131, 365
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 337
LpnPI CCDG 7 cut(s) 33, 56, 77, 90, 117, 120, 345
LweI GCATC 1 cut(s) 140
MabI ACCWGGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 1 cut(s) 291
MluCI AATT 2 cut(s) 254, 354
MnlI CCTC 5 cut(s) 91, 180, 188, 240, 275
MseI TTAA 2 cut(s) 81, 210
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 10
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 102
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 2 cut(s) 107, 137
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 2 cut(s) 81, 210
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 2 cut(s) 107, 137
ScrFI CCNGG 1 cut(s) 105
SetI ASST 6 cut(s) 45, 106, 232, 253, 313, 337
SexAI ACCWGGT 1 cut(s) 103
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 2 cut(s) 107, 137
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 2 cut(s) 254, 354
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 347
TasI AATT 2 cut(s) 254, 354
Tru1I TTAA 2 cut(s) 81, 210
Tru9I TTAA 2 cut(s) 81, 210
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 107, 137
XapI RAATTY 2 cut(s) 254, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.