Rh5DG358500

chromodomain-helicase-DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0025049
Physical Location & Seq
Forward (+)
53394676 .. 53419042
24367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG358500.1

Sequence Viewer

Length: 687 bp
ATGTGGATTAATAAGCTCTTGGTCATTGAGCAGGAAGTCGAAGAAGAGAAGATTGAAGATGGTGAAGGTTCAATTAGTGTTAATGTTGGTGTTGGTTGTGGCTGCATCATCGACTTCGTCTCATGCTCGCACCTTAATTGGCTTGGTGGACATATTCAGTTATGGGCATTATCATTCTACCACTTCCACTTCCATTCCCATGTATTTGCCTCGACCCCAGCCAACCAGTTCATGACAATGCCATCGACTTTCACAACCACAACTATGTTCAAGTCAATACAGCATCTATTTACTAAAATACCATGTACAGGGATGACCACGCGCTTGTGGAACTTTGTTTCTACATTTTCAAACCTGTCTGGAGAGAGACTTCACCAAATATATGCGAAACTTAAACAAGAGCAGGATGAGGAACCTGGTCCTTCCCACATCAATGGCTCTGCATCTGGTCCTTTTGGCAGAGACAGTGACCCTACTTCCTTCTCCCATCTTGCTGAGAGGCAAAGAGGGTACAAAAGTGTTAATAACCAAACATTTGAACCTCTGAAGGGTTCTGATACAGCTAAATTTGAAGCATGGAAACGAAGGAGAAGAGGGGAGACTGATAGTCCATCTCAAAGACCTTTGAGTAATGGTTCTCGGCCAGCTGATCCAAACTCGATGGGAATTCTTGGTGCAGTAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo DUF4208 Helicase_C SLIDE SNF2_N

Protein Analysis

228

Amino Acids

25.53

Weight (kDa)

6.55

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025049)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0050771
rosa_samantha Rh5BG345300 Rh5DG358500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 1 cut(s) 641
AcsI RAATTY 2 cut(s) 566, 666
AcuI CTGAAG 1 cut(s) 566
AfaI GTAC 2 cut(s) 307, 512
AfiI CCNNNNNNNGG 2 cut(s) 308, 548
AgsI TTSAA 6 cut(s) 56, 72, 271, 351, 539, 572
AhdI GACNNNNNGTC 1 cut(s) 606
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 3 cut(s) 16, 563, 647
AluI AGCT 3 cut(s) 16, 563, 647
Alw26I GTCTC 4 cut(s) 124, 361, 456, 593
AlwI GGATC 1 cut(s) 644
AoxI GGCC 1 cut(s) 641
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 2 cut(s) 566, 666
AseI ATTAAT 1 cut(s) 9
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 419, 449
AsuHPI GGTGA 2 cut(s) 74, 365
AvaII GGWCC 2 cut(s) 419, 449
BaeI ACNNNNGTAYC 2 cut(s) 502, 535
BbvI GCAGC 1 cut(s) 89
BccI CCATC 5 cut(s) 53, 250, 495, 619, 655
BciT130I CCWGG 1 cut(s) 417
BcoDI GTCTC 4 cut(s) 124, 361, 456, 593
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 417
Bme18I GGWCC 2 cut(s) 419, 449
BmeRI GACNNNNNGTC 1 cut(s) 606
BmgT120I GGNCC 2 cut(s) 419, 449
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 3 cut(s) 114, 292, 452
BpmI CTGGAG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 548
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 417
BseGI GGATG 2 cut(s) 318, 412
BseLI CCNNNNNNNGG 2 cut(s) 308, 548
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 308, 548
BsmAI GTCTC 4 cut(s) 124, 361, 456, 593
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 1 cut(s) 643
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 1 cut(s) 649
BspANI GGCC 1 cut(s) 643
BspCNI CTCAG 1 cut(s) 487
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 1 cut(s) 644
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 1 cut(s) 226
BssMI GATC 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 2 cut(s) 39, 586
BstAUI TGTACA 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 128, 645
BstDEI CTNAG 1 cut(s) 495
BstF5I GGATG 2 cut(s) 318, 412
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 1 cut(s) 652
BstMAI GTCTC 4 cut(s) 124, 361, 456, 593
BstMBI GATC 1 cut(s) 649
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 415
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 89
BstXI CCANNNNNNTGG 1 cut(s) 434
BsuRI GGCC 1 cut(s) 643
BtsCI GGATG 2 cut(s) 318, 412
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 128, 645
CciI TCATGA 1 cut(s) 231
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 419, 449
CsiI ACCWGGT 1 cut(s) 415
Csp6I GTAC 2 cut(s) 306, 511
CviAII CATG 5 cut(s) 123, 200, 232, 303, 576
CviJI RGCY 8 cut(s) 16, 102, 142, 221, 438, 563, 643, 647
CviKI_1 RGCY 8 cut(s) 16, 102, 142, 221, 438, 563, 643, 647
CviQI GTAC 2 cut(s) 306, 511
DdeI CTNAG 1 cut(s) 495
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
DriI GACNNNNNGTC 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 641
Eam1104I CTCTTC 2 cut(s) 39, 586
Eam1105I GACNNNNNGTC 1 cut(s) 606
EarI CTCTTC 2 cut(s) 39, 586
Eco47I GGWCC 2 cut(s) 419, 449
Eco57I CTGAAG 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 666
EcoRII CCWGG 1 cut(s) 415
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 5 cut(s) 126, 203, 235, 306, 579
FatI CATG 5 cut(s) 122, 199, 231, 302, 575
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 2 cut(s) 325, 419
Fsp4HI GCNGC 1 cut(s) 103
GlaI GCGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 103
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 1 cut(s) 643
HhaI GCGC 1 cut(s) 324
Hin1II CATG 5 cut(s) 126, 203, 235, 306, 579
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HphI GGTGA 2 cut(s) 74, 365
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 546, 556
Hpy188III TCNNGA 2 cut(s) 232, 360
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 5 cut(s) 59, 432, 490, 541, 579
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4V TGCA 3 cut(s) 105, 443, 677
HpyF3I CTNAG 1 cut(s) 495
Hsp92II CATG 5 cut(s) 126, 203, 235, 306, 579
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 649
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 3 cut(s) 114, 292, 452
MabI ACCWGGT 1 cut(s) 415
MaeIII GTNAC 1 cut(s) 467
MalI GATC 1 cut(s) 651
MboI GATC 1 cut(s) 649
MboII GAAGA 5 cut(s) 53, 56, 61, 68, 603
MluCI AATT 4 cut(s) 72, 136, 566, 666
MnlI CCTC 6 cut(s) 220, 403, 492, 500, 552, 587
MseI TTAA 5 cut(s) 9, 81, 135, 393, 522
MslI CAYNNNNRTG 4 cut(s) 198, 236, 263, 432
MspA1I CMGCKG 1 cut(s) 647
MspR9I CCNGG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 322
NdeII GATC 1 cut(s) 649
NlaIII CATG 5 cut(s) 126, 203, 235, 306, 579
NlaIV GGNNCC 1 cut(s) 414
NmeAIII GCCGAG 1 cut(s) 619
NmuCI GTSAC 1 cut(s) 467
PagI TCATGA 1 cut(s) 231
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 2 cut(s) 419, 449
PsyI GACNNNGTC 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 2 cut(s) 307, 512
RsaNI GTAC 2 cut(s) 306, 511
RseI CAYNNNNRTG 4 cut(s) 198, 236, 263, 432
SaqAI TTAA 5 cut(s) 9, 81, 135, 393, 522
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 1 cut(s) 649
Sau96I GGNCC 2 cut(s) 419, 449
ScrFI CCNGG 1 cut(s) 417
SetI ASST 9 cut(s) 18, 70, 135, 357, 418, 544, 565, 625, 649
SexAI ACCWGGT 1 cut(s) 415
SfaNI GCATC 3 cut(s) 114, 292, 452
SinI GGWCC 2 cut(s) 419, 449
SmiMI CAYNNNNRTG 4 cut(s) 198, 236, 263, 432
Sse9I AATT 4 cut(s) 72, 136, 566, 666
StyD4I CCNGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 467
TaqI TCGA 5 cut(s) 39, 111, 212, 245, 659
TasI AATT 4 cut(s) 72, 136, 566, 666
TatI WGTACW 1 cut(s) 305
Tru1I TTAA 5 cut(s) 9, 81, 135, 393, 522
Tru9I TTAA 5 cut(s) 9, 81, 135, 393, 522
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 1 cut(s) 220
TspRI CASTG 1 cut(s) 472
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 419, 449
VspI ATTAAT 1 cut(s) 9
XapI RAATTY 2 cut(s) 566, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.