RchiOBHm_Chr5g0056611

Transport inhibitor response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030290
Physical Location & Seq
Reverse (-)
60314906 .. 60316159
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33349

Sequence Viewer

Length: 792 bp
ATGCCGGCCCATTGGGGCGCCCACTTTGGGCCCTGGGTCTCCGCCATGGCCAAGGCTTACCCTTGGCTCGAGAAAGTCTATCTCAAGCGCATGTCCGTAACGGACGACGATCTGGCTCTGCTGGCCGAGTCGTTCCCCGGGTTCAAGGGCCTCGTTCTGGTTTGCTGTGATGGATTTGGGACCAGTGGCCTCGCTGTGGTCGCCAGTAAGTGCAGTTTAAAGCTTAGGGTGCTTGATTTGATTGAATATGAGGTTATCGACGACGATGTGGATTGGATATGTTGTTTTCCTGAGAGCCAAACCTGTCTGGAGTCTCTGATGTTTGATTGCGTAGAATGCCTCGTAAATTTCGAGGCATTGGAGAGGCTGGTGATTAGGTCAACTTCCTTGAAGAAACTTAGGTTGAACAGCTATGTTTCAATTGGGCAGCTACACCGCTTGATGGTTAGAGCTCCACAGCTCACTCACCTAAGAACGGGCTCATTCAGTTCATTGGAGGGCAATGCTCAGGGGGATCAAGAACTGGATTGTGTCTCTGCTTTTGCTGCTTGCAAATCCATAGTCTGTCTATCTGGGTTCAATGAGATATTTGTGGATCAGTTGCCTGCAATTTACCCCGTCTGTGCTAATCTGACCAATCTGAATTTCAGCTATGCAAATATCAGTGCAGAACAACTTAAACCAGTCATACGAAACTGCCACAAGCTCCAGACTTTCTGGGTACTCGATTCAGTATGTGATGAAGGCCTTAAGGCAGTGGCTGCAACTAGCAAGGAACTGCGTGAACTTTAG

Protein Analysis

263

Amino Acids

29.19

Weight (kDa)

5.16

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transp_inhibit PF18791 1 - 28 1.3e-09 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030290)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0056611
rosa_samantha Rh5CG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AciI CCGC 2 cut(s) 42, 436
AclWI GGATC 2 cut(s) 522, 603
AcoI YGGCCR 2 cut(s) 48, 123
AcsI RAATTY 2 cut(s) 346, 643
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 723
AfiI CCNNNNNNNGG 5 cut(s) 27, 157, 196, 442, 475
AflII CTTAAG 1 cut(s) 749
AgsI TTSAA 6 cut(s) 145, 245, 391, 406, 420, 580
AjnI CCWGG 1 cut(s) 32
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AluBI AGCT 7 cut(s) 223, 411, 430, 452, 460, 651, 706
AluI AGCT 7 cut(s) 223, 411, 430, 452, 460, 651, 706
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 3 cut(s) 43, 318, 538
AlwI GGATC 2 cut(s) 522, 603
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 2 cut(s) 68, 137
AoxI GGCC 7 cut(s) 6, 29, 48, 123, 148, 187, 745
ApaI GGGCCC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 427, 545, 761
ApoI RAATTY 2 cut(s) 346, 643
ArsI GACNNNNNNTTYG 2 cut(s) 546, 578
AspLEI GCGC 2 cut(s) 20, 90
AspS9I GGNCC 5 cut(s) 7, 29, 30, 148, 180
AsuC2I CCSGG 2 cut(s) 138, 139
AsuHPI GGTGA 2 cut(s) 382, 458
AvaI CYCGRG 2 cut(s) 68, 137
AvaII GGWCC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 3 cut(s) 33, 454, 482
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 3 cut(s) 439, 532, 748
BccI CCATC 2 cut(s) 164, 436
BciT130I CCWGG 1 cut(s) 34
BcnI CCSGG 2 cut(s) 138, 139
BcoDI GTCTC 3 cut(s) 43, 318, 538
BfaI CTAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 749
BisI GCNGC 3 cut(s) 428, 546, 762
BlsI GCNGC 3 cut(s) 429, 547, 763
Bme1390I CCNGG 3 cut(s) 34, 138, 139
Bme18I GGWCC 1 cut(s) 180
BmeT110I CYCGRG 2 cut(s) 68, 137
BmgT120I GGNCC 5 cut(s) 7, 29, 30, 148, 180
BmiI GGNNCC 3 cut(s) 19, 31, 181
BmrFI CCNGG 3 cut(s) 34, 138, 139
BpmI CTGGAG 2 cut(s) 329, 692
Bpu10I CCTNAGC 2 cut(s) 224, 507
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 2 cut(s) 138, 139
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 7 cut(s) 32, 33, 45, 51, 62, 136, 137
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 157, 196, 442, 475
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 4 cut(s) 183, 204, 528, 683
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 7 cut(s) 32, 33, 45, 51, 62, 136, 137
BseLI CCNNNNNNNGG 5 cut(s) 27, 157, 196, 442, 475
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 282, 521
BseNI ACTGG 4 cut(s) 183, 204, 528, 683
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 3 cut(s) 439, 532, 748
BsgI GTGCAG 2 cut(s) 232, 687
BshFI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 454
BsiHKCI CYCGRG 2 cut(s) 68, 137
BsiSI CCGG 2 cut(s) 5, 138
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 5 cut(s) 27, 157, 196, 442, 475
BsmAI GTCTC 3 cut(s) 43, 318, 538
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 2 cut(s) 68, 137
Bsp120I GGGCCC 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 33, 454, 482
Bsp143I GATC 3 cut(s) 109, 514, 595
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 42, 436
BspANI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
BspCNI CTCAG 2 cut(s) 283, 520
BspLI GGNNCC 3 cut(s) 19, 31, 181
BspPI GGATC 2 cut(s) 522, 603
BspT107I GGYRCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 4 cut(s) 183, 204, 528, 683
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 7 cut(s) 32, 33, 45, 51, 62, 136, 137
BssMI GATC 3 cut(s) 109, 514, 595
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 3 cut(s) 45, 51, 62
Bst2UI CCWGG 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 749
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 4 cut(s) 6, 123, 550, 606
BstDEI CTNAG 5 cut(s) 224, 291, 398, 470, 507
BstDSI CCRYGG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 90
BstKTI GATC 3 cut(s) 112, 517, 598
BstMAI GTCTC 3 cut(s) 43, 318, 538
BstMBI GATC 3 cut(s) 109, 514, 595
BstMWI GCNNNNNNNGC 6 cut(s) 122, 200, 229, 336, 545, 761
BstNI CCWGG 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 32, 136, 137
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 439, 532, 748
BsuRI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
BtgI CCRYGG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 3 cut(s) 190, 670, 762
Cac8I GCNNGC 4 cut(s) 6, 123, 550, 606
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 2 cut(s) 20, 90
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 5 cut(s) 7, 29, 30, 148, 180
Cfr9I CCCGGG 1 cut(s) 137
Csp6I GTAC 1 cut(s) 722
CviAII CATG 2 cut(s) 46, 91
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 5 cut(s) 224, 291, 398, 470, 507
DinI GGCGCC 1 cut(s) 19
DpnI GATC 3 cut(s) 111, 516, 597
DpnII GATC 3 cut(s) 109, 514, 595
DraI TTTAAA 1 cut(s) 219
EaeI YGGCCR 2 cut(s) 48, 123
EciI GGCGGA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 452
Eco130I CCWWGG 3 cut(s) 45, 51, 62
Eco147I AGGCCT 1 cut(s) 747
Eco24I GRGCYC 3 cut(s) 33, 454, 482
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 452
Eco88I CYCGRG 2 cut(s) 68, 137
EcoICRI GAGCTC 1 cut(s) 452
EcoO109I RGGNCCY 2 cut(s) 30, 148
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 3 cut(s) 45, 51, 62
EcoT38I GRGCYC 3 cut(s) 33, 454, 482
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
ErhI CCWWGG 3 cut(s) 45, 51, 62
FaeI CATG 2 cut(s) 49, 94
FaiI YATR 9 cut(s) 47, 92, 249, 280, 414, 560, 654, 689, 736
FaqI GGGAC 1 cut(s) 193
FatI CATG 2 cut(s) 45, 90
Fnu4HI GCNGC 3 cut(s) 428, 546, 762
FriOI GRGCYC 3 cut(s) 33, 454, 482
Fsp4HI GCNGC 3 cut(s) 428, 546, 762
FspBI CTAG 1 cut(s) 768
GlaI GCGC 2 cut(s) 19, 89
GluI GCNGC 3 cut(s) 428, 546, 762
GsuI CTGGAG 2 cut(s) 329, 692
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
HapII CCGG 2 cut(s) 5, 138
HhaI GCGC 2 cut(s) 20, 90
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 2 cut(s) 49, 94
Hin6I GCGC 2 cut(s) 18, 88
HinP1I GCGC 2 cut(s) 18, 88
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 128, 311, 728
HpaII CCGG 2 cut(s) 5, 138
HphI GGTGA 2 cut(s) 382, 458
Hpy166II GTNNAC 2 cut(s) 381, 785
Hpy188I TCNGA 3 cut(s) 318, 633, 642
Hpy188III TCNNGA 5 cut(s) 70, 290, 308, 518, 709
Hpy8I GTNNAC 2 cut(s) 381, 785
Hpy99I CGWCG 3 cut(s) 110, 263, 266
HpyAV CCTTC 1 cut(s) 737
HpyCH4V TGCA 6 cut(s) 213, 552, 608, 656, 668, 764
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 200, 229, 336, 545, 761
HpyF3I CTNAG 5 cut(s) 224, 291, 398, 470, 507
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 49, 94
HspAI GCGC 2 cut(s) 18, 88
KasI GGCGCC 1 cut(s) 17
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 109, 514, 595
LmnI GCTCC 2 cut(s) 457, 711
Lsp1109I GCAGC 3 cut(s) 439, 532, 748
MaeI CTAG 1 cut(s) 768
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 111, 516, 597
MboI GATC 3 cut(s) 109, 514, 595
MboII GAAGA 1 cut(s) 403
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 3 cut(s) 33, 454, 482
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 4 cut(s) 346, 420, 609, 643
MluNI TGGCCA 1 cut(s) 50
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 2 cut(s) 137, 320
MnlI CCTC 7 cut(s) 161, 200, 244, 346, 350, 357, 490
Mox20I TGGCCA 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 4
MscI TGGCCA 1 cut(s) 50
MseI TTAA 3 cut(s) 218, 678, 750
Msp20I TGGCCA 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 749
MspI CCGG 2 cut(s) 5, 138
MspR9I CCNGG 3 cut(s) 34, 138, 139
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 6 cut(s) 122, 200, 229, 336, 545, 761
NaeI GCCGGC 1 cut(s) 6
NarI GGCGCC 1 cut(s) 18
NciI CCSGG 2 cut(s) 138, 139
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 109, 514, 595
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 49, 94
NlaIV GGNNCC 3 cut(s) 19, 31, 181
NmeAIII GCCGAG 1 cut(s) 151
NspI RCATGY 1 cut(s) 94
PaeR7I CTCGAG 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 33
PceI AGGCCT 1 cut(s) 747
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 341
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 728
PkrI GCNGC 3 cut(s) 429, 547, 763
PleI GAGTC 2 cut(s) 136, 319
PluTI GGCGCC 1 cut(s) 21
PpsI GAGTC 2 cut(s) 136, 319
Psp124BI GAGCTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 3 cut(s) 19, 31, 181
PspOMI GGGCCC 1 cut(s) 29
PspPI GGNCC 5 cut(s) 7, 29, 30, 148, 180
PstNI CAGNNNCTG 1 cut(s) 761
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
SacI GAGCTC 1 cut(s) 454
SaqAI TTAA 3 cut(s) 218, 678, 750
SatI GCNGC 3 cut(s) 428, 546, 762
Sau3AI GATC 3 cut(s) 109, 514, 595
Sau96I GGNCC 5 cut(s) 7, 29, 30, 148, 180
SchI GAGTC 2 cut(s) 137, 320
ScrFI CCNGG 3 cut(s) 34, 138, 139
SduI GDGCHC 3 cut(s) 33, 454, 482
SfoI GGCGCC 1 cut(s) 19
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 68
SmaI CCCGGG 1 cut(s) 139
SmlI CTYRAG 3 cut(s) 68, 83, 749
SmoI CTYRAG 3 cut(s) 68, 83, 749
Sse9I AATT 4 cut(s) 346, 420, 609, 643
SseBI AGGCCT 1 cut(s) 747
SsiI CCGC 2 cut(s) 42, 436
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 1 cut(s) 768
SstI GAGCTC 1 cut(s) 454
StuI AGGCCT 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 32, 136, 137
StyI CCWWGG 3 cut(s) 45, 51, 62
TaqI TCGA 4 cut(s) 69, 258, 351, 726
TasI AATT 4 cut(s) 346, 420, 609, 643
TfiI GAWTC 1 cut(s) 728
Tru1I TTAA 3 cut(s) 218, 678, 750
Tru9I TTAA 3 cut(s) 218, 678, 750
TscAI CASTG 3 cut(s) 190, 670, 762
TseI GCWGC 3 cut(s) 427, 545, 761
TspDTI ATGAA 2 cut(s) 480, 756
TspGWI ACGGA 2 cut(s) 85, 116
TspMI CCCGGG 1 cut(s) 137
TspRI CASTG 3 cut(s) 190, 670, 762
Vha464I CTTAAG 1 cut(s) 749
VpaK11BI GGWCC 1 cut(s) 180
XapI RAATTY 2 cut(s) 346, 643
XceI RCATGY 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 68
XmaI CCCGGG 1 cut(s) 137
XspI CTAG 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.