Rh5CG406100

Transport inhibitor response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0030290
Physical Location & Seq
Reverse (-)
54344388 .. 54345642
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG406100.1

Sequence Viewer

Length: 792 bp
ATGCCGGCCCATTGGGGCGCCCACTTTGGGCCCTGGGTCTCCGCCATGGCCAAGGCTTACCCTTGGCTCGAGAAAGTCTATCTCAAGCGCATGTCCGTAACGGACGACGATCTGGCTCTGCTGGCCGAGTCGTTCCCCGGGTTCAAGGGCCTCGTTCTGGTTTGCTGTGATGGATTTGGGACCAGTGGCCTCGCTGTGGTCGCCAGTAAGTGCAGTTTAAAGCTTAGGGTGCTTGATTTGATTGAATATGAGGTTATCGACGACGATGTGGATTGGATATGTTGTTTTCCTGAGAGCCAAACCTGTCTGGAGTCTCTGATGTTTGATTGCGTAGAATGCCTCGTAAATTTCGAGGCATTGGAGAGGCTGGTGATTAGGTCAACTTCCTTGAAGAAACTTAGGTTGAACAGCTATGTTTCAATTGGGCAGCTACACCGCTTGATGGTTAGAGCTCCACAGCTCACTCACCTAAGAACGGGCTCATTCAGTTCATTGGAGGGCAATGCTCAGGGGGATCAAGAACTGGATTGTGTCTCTGCTTTTGCTGCTTGCAAATCCATAGTCTGTCTATCTGGGTTCAATGAGATATTTGTGGATCAGTTGCCTGCAATTTACCCCGTCTGTGCTAATCTGACCAATCTGAATTTCAGCTATGCAAATATCAGTGCAGAACAACTTAAACCAGTCATACGAAACTGCCACAAGCTCCAGACTTTCTGGGTACTCGATTCAGTATGTGATGAAGGCCTTAAGGCAGTGGCTGCAACTAGCAAGGAACTGCGTGAACTTTAG

Protein Analysis

263

Amino Acids

29.19

Weight (kDa)

5.16

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transp_inhibit PF18791 1 - 28 1.3e-09 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030290)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0056611
rosa_samantha Rh5CG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AciI CCGC 2 cut(s) 42, 436
AclWI GGATC 2 cut(s) 522, 603
AcoI YGGCCR 2 cut(s) 48, 123
AcsI RAATTY 2 cut(s) 346, 643
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 723
AfiI CCNNNNNNNGG 5 cut(s) 27, 157, 196, 442, 475
AflII CTTAAG 1 cut(s) 749
AgsI TTSAA 6 cut(s) 145, 245, 391, 406, 420, 580
AjnI CCWGG 1 cut(s) 32
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AluBI AGCT 7 cut(s) 223, 411, 430, 452, 460, 651, 706
AluI AGCT 7 cut(s) 223, 411, 430, 452, 460, 651, 706
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 3 cut(s) 43, 318, 538
AlwI GGATC 2 cut(s) 522, 603
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 2 cut(s) 68, 137
AoxI GGCC 7 cut(s) 6, 29, 48, 123, 148, 187, 745
ApaI GGGCCC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 427, 545, 761
ApoI RAATTY 2 cut(s) 346, 643
ArsI GACNNNNNNTTYG 2 cut(s) 546, 578
AspLEI GCGC 2 cut(s) 20, 90
AspS9I GGNCC 5 cut(s) 7, 29, 30, 148, 180
AsuC2I CCSGG 2 cut(s) 138, 139
AsuHPI GGTGA 2 cut(s) 382, 458
AvaI CYCGRG 2 cut(s) 68, 137
AvaII GGWCC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 3 cut(s) 33, 454, 482
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 3 cut(s) 439, 532, 748
BccI CCATC 2 cut(s) 164, 436
BciT130I CCWGG 1 cut(s) 34
BcnI CCSGG 2 cut(s) 138, 139
BcoDI GTCTC 3 cut(s) 43, 318, 538
BfaI CTAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 749
BisI GCNGC 3 cut(s) 428, 546, 762
BlsI GCNGC 3 cut(s) 429, 547, 763
Bme1390I CCNGG 3 cut(s) 34, 138, 139
Bme18I GGWCC 1 cut(s) 180
BmeT110I CYCGRG 2 cut(s) 68, 137
BmgT120I GGNCC 5 cut(s) 7, 29, 30, 148, 180
BmiI GGNNCC 3 cut(s) 19, 31, 181
BmrFI CCNGG 3 cut(s) 34, 138, 139
BpmI CTGGAG 2 cut(s) 329, 692
Bpu10I CCTNAGC 2 cut(s) 224, 507
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 2 cut(s) 138, 139
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 7 cut(s) 32, 33, 45, 51, 62, 136, 137
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 157, 196, 442, 475
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 4 cut(s) 183, 204, 528, 683
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 7 cut(s) 32, 33, 45, 51, 62, 136, 137
BseLI CCNNNNNNNGG 5 cut(s) 27, 157, 196, 442, 475
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 282, 521
BseNI ACTGG 4 cut(s) 183, 204, 528, 683
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 3 cut(s) 439, 532, 748
BsgI GTGCAG 2 cut(s) 232, 687
BshFI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 454
BsiHKCI CYCGRG 2 cut(s) 68, 137
BsiSI CCGG 2 cut(s) 5, 138
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 5 cut(s) 27, 157, 196, 442, 475
BsmAI GTCTC 3 cut(s) 43, 318, 538
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 2 cut(s) 68, 137
Bsp120I GGGCCC 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 33, 454, 482
Bsp143I GATC 3 cut(s) 109, 514, 595
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 42, 436
BspANI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
BspCNI CTCAG 2 cut(s) 283, 520
BspLI GGNNCC 3 cut(s) 19, 31, 181
BspPI GGATC 2 cut(s) 522, 603
BspT107I GGYRCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 4 cut(s) 183, 204, 528, 683
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 7 cut(s) 32, 33, 45, 51, 62, 136, 137
BssMI GATC 3 cut(s) 109, 514, 595
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 3 cut(s) 45, 51, 62
Bst2UI CCWGG 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 749
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 4 cut(s) 6, 123, 550, 606
BstDEI CTNAG 5 cut(s) 224, 291, 398, 470, 507
BstDSI CCRYGG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 90
BstKTI GATC 3 cut(s) 112, 517, 598
BstMAI GTCTC 3 cut(s) 43, 318, 538
BstMBI GATC 3 cut(s) 109, 514, 595
BstMWI GCNNNNNNNGC 6 cut(s) 122, 200, 229, 336, 545, 761
BstNI CCWGG 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 32, 136, 137
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 439, 532, 748
BsuRI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
BtgI CCRYGG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 3 cut(s) 190, 670, 762
Cac8I GCNNGC 4 cut(s) 6, 123, 550, 606
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 2 cut(s) 20, 90
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 5 cut(s) 7, 29, 30, 148, 180
Cfr9I CCCGGG 1 cut(s) 137
Csp6I GTAC 1 cut(s) 722
CviAII CATG 2 cut(s) 46, 91
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 5 cut(s) 224, 291, 398, 470, 507
DinI GGCGCC 1 cut(s) 19
DpnI GATC 3 cut(s) 111, 516, 597
DpnII GATC 3 cut(s) 109, 514, 595
DraI TTTAAA 1 cut(s) 219
EaeI YGGCCR 2 cut(s) 48, 123
EciI GGCGGA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 452
Eco130I CCWWGG 3 cut(s) 45, 51, 62
Eco147I AGGCCT 1 cut(s) 747
Eco24I GRGCYC 3 cut(s) 33, 454, 482
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 452
Eco88I CYCGRG 2 cut(s) 68, 137
EcoICRI GAGCTC 1 cut(s) 452
EcoO109I RGGNCCY 2 cut(s) 30, 148
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 3 cut(s) 45, 51, 62
EcoT38I GRGCYC 3 cut(s) 33, 454, 482
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
ErhI CCWWGG 3 cut(s) 45, 51, 62
FaeI CATG 2 cut(s) 49, 94
FaiI YATR 9 cut(s) 47, 92, 249, 280, 414, 560, 654, 689, 736
FaqI GGGAC 1 cut(s) 193
FatI CATG 2 cut(s) 45, 90
Fnu4HI GCNGC 3 cut(s) 428, 546, 762
FriOI GRGCYC 3 cut(s) 33, 454, 482
Fsp4HI GCNGC 3 cut(s) 428, 546, 762
FspBI CTAG 1 cut(s) 768
GlaI GCGC 2 cut(s) 19, 89
GluI GCNGC 3 cut(s) 428, 546, 762
GsuI CTGGAG 2 cut(s) 329, 692
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 747
HapII CCGG 2 cut(s) 5, 138
HhaI GCGC 2 cut(s) 20, 90
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 2 cut(s) 49, 94
Hin6I GCGC 2 cut(s) 18, 88
HinP1I GCGC 2 cut(s) 18, 88
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 128, 311, 728
HpaII CCGG 2 cut(s) 5, 138
HphI GGTGA 2 cut(s) 382, 458
Hpy166II GTNNAC 2 cut(s) 381, 785
Hpy188I TCNGA 3 cut(s) 318, 633, 642
Hpy188III TCNNGA 5 cut(s) 70, 290, 308, 518, 709
Hpy8I GTNNAC 2 cut(s) 381, 785
Hpy99I CGWCG 3 cut(s) 110, 263, 266
HpyAV CCTTC 1 cut(s) 737
HpyCH4V TGCA 6 cut(s) 213, 552, 608, 656, 668, 764
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 200, 229, 336, 545, 761
HpyF3I CTNAG 5 cut(s) 224, 291, 398, 470, 507
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 49, 94
HspAI GCGC 2 cut(s) 18, 88
KasI GGCGCC 1 cut(s) 17
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 109, 514, 595
LmnI GCTCC 2 cut(s) 457, 711
Lsp1109I GCAGC 3 cut(s) 439, 532, 748
MaeI CTAG 1 cut(s) 768
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 111, 516, 597
MboI GATC 3 cut(s) 109, 514, 595
MboII GAAGA 1 cut(s) 403
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 3 cut(s) 33, 454, 482
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 4 cut(s) 346, 420, 609, 643
MluNI TGGCCA 1 cut(s) 50
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 2 cut(s) 137, 320
MnlI CCTC 7 cut(s) 161, 200, 244, 346, 350, 357, 490
Mox20I TGGCCA 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 4
MscI TGGCCA 1 cut(s) 50
MseI TTAA 3 cut(s) 218, 678, 750
Msp20I TGGCCA 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 749
MspI CCGG 2 cut(s) 5, 138
MspR9I CCNGG 3 cut(s) 34, 138, 139
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 6 cut(s) 122, 200, 229, 336, 545, 761
NaeI GCCGGC 1 cut(s) 6
NarI GGCGCC 1 cut(s) 18
NciI CCSGG 2 cut(s) 138, 139
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 109, 514, 595
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 49, 94
NlaIV GGNNCC 3 cut(s) 19, 31, 181
NmeAIII GCCGAG 1 cut(s) 151
NspI RCATGY 1 cut(s) 94
PaeR7I CTCGAG 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 33
PceI AGGCCT 1 cut(s) 747
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 341
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 728
PkrI GCNGC 3 cut(s) 429, 547, 763
PleI GAGTC 2 cut(s) 136, 319
PluTI GGCGCC 1 cut(s) 21
PpsI GAGTC 2 cut(s) 136, 319
Psp124BI GAGCTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 3 cut(s) 19, 31, 181
PspOMI GGGCCC 1 cut(s) 29
PspPI GGNCC 5 cut(s) 7, 29, 30, 148, 180
PstNI CAGNNNCTG 1 cut(s) 761
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
SacI GAGCTC 1 cut(s) 454
SaqAI TTAA 3 cut(s) 218, 678, 750
SatI GCNGC 3 cut(s) 428, 546, 762
Sau3AI GATC 3 cut(s) 109, 514, 595
Sau96I GGNCC 5 cut(s) 7, 29, 30, 148, 180
SchI GAGTC 2 cut(s) 137, 320
ScrFI CCNGG 3 cut(s) 34, 138, 139
SduI GDGCHC 3 cut(s) 33, 454, 482
SfoI GGCGCC 1 cut(s) 19
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 68
SmaI CCCGGG 1 cut(s) 139
SmlI CTYRAG 3 cut(s) 68, 83, 749
SmoI CTYRAG 3 cut(s) 68, 83, 749
Sse9I AATT 4 cut(s) 346, 420, 609, 643
SseBI AGGCCT 1 cut(s) 747
SsiI CCGC 2 cut(s) 42, 436
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 1 cut(s) 768
SstI GAGCTC 1 cut(s) 454
StuI AGGCCT 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 32, 136, 137
StyI CCWWGG 3 cut(s) 45, 51, 62
TaqI TCGA 4 cut(s) 69, 258, 351, 726
TasI AATT 4 cut(s) 346, 420, 609, 643
TfiI GAWTC 1 cut(s) 728
Tru1I TTAA 3 cut(s) 218, 678, 750
Tru9I TTAA 3 cut(s) 218, 678, 750
TscAI CASTG 3 cut(s) 190, 670, 762
TseI GCWGC 3 cut(s) 427, 545, 761
TspDTI ATGAA 2 cut(s) 480, 756
TspGWI ACGGA 2 cut(s) 85, 116
TspMI CCCGGG 1 cut(s) 137
TspRI CASTG 3 cut(s) 190, 670, 762
Vha464I CTTAAG 1 cut(s) 749
VpaK11BI GGWCC 1 cut(s) 180
XapI RAATTY 2 cut(s) 346, 643
XceI RCATGY 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 68
XmaI CCCGGG 1 cut(s) 137
XspI CTAG 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.