Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030148

Physical Location & Seq

Genomic Coordinates Reverse (-)

68100938 .. 68102217

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGACATACAATGCTTCCTTTGCATATTCACCTTATGCACATCACTGGAAGTTCACCAAGAAGTTGATCACGAATGAGCTCCTAGGCGGCCGTAGCGTGGACAACTTTTCAGCCATCCAAAACCAAGAGTACGTGAGGCTTCTGAGGCTGTTAGCCAAGAAAGTTGAGACTTGCGAATCAGTCAACCTCAGTGAGGAGTGTCGAGGAACCAAGACCATACATAAGAAGTTCGATGAATTGGTGGAGAAGGTGATCGCTGAACGTGAAGAGTTGAGGAAGATGCAGAAGAAAGGCAACACTGCAGAAGAAAAGGATGTCAAGAGCTTTCTTGATATTTTGGAGGGTGAGGGTAGTGAGAATTTGGAGGTTGAATTTTCAAGAAATCATGTTAAGGGTCTAATCACGGATTTGTTCGCGGCTAGCATAGACACAACCTCCATTTCAATGGAATGGGCGCTGGCAGAGCTTATCAATCACCCAGAGATGCTTACAAAAGCAAGGGATGAGATAGATCGAGTCGTTGAAAATGGACGATTAGTCGGAGAATTGGATGTTCCCAATCTTTCCTACATCCAAGCCATCATAAAAGAATCATTTAGGCTACACCCACTATTGACTTTAGTCGCAAGAAAATGTGTAGAACAATATAAGGTTGGCAAACAAGTCATTGCCAAAGACATTTGGGTCATCGGAAGAGATCCTAAGAATTGGGAAAAGCCATTAGAGTTTTGTCCTGAAAGATTCTTACAACTTGATGGGGACAACAAGGCAAATGCAATAGATGTTAGAGGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

265

Amino Acids

30.41

Weight (kDa)

5.96

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	63 - 253	5.2e-41	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030148)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0062531
rosa_laevigata	RLG00000035564

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
AccII	CGCG	1 cut(s)	416
AciI	CCGC	2 cut(s)	87, 416
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	358, 371
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	97, 193
AgsI	TTSAA	4 cut(s)	371, 378, 444, 524
AhdI	GACNNNNNGTC	1 cut(s)	536
AluBI	AGCT	3 cut(s)	79, 324, 466
AluI	AGCT	3 cut(s)	79, 324, 466
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	692
AoxI	GGCC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	358, 371
AspA2I	CCTAGG	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	457
AsuHPI	GGTGA	5 cut(s)	21, 46, 262, 356, 467
AsuNHI	GCTAGC	1 cut(s)	419
AvrII	CCTAGG	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BccI	CCATC	3 cut(s)	122, 587, 749
BceAI	ACGGC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	83, 420
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	458
BisI	GCNGC	2 cut(s)	88, 417
BlnI	CCTAGG	1 cut(s)	82
BlsI	GCNGC	2 cut(s)	89, 418
BmeRI	GACNNNNNGTC	1 cut(s)	536
BmiI	GGNNCC	1 cut(s)	208
BmsI	GCATC	2 cut(s)	270, 474
BmtI	GCTAGC	1 cut(s)	423
BoxI	GACNNNNGTC	1 cut(s)	620
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 193
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	5 cut(s)	114, 319, 508, 556, 570
BseLI	CCNNNNNNNGG	2 cut(s)	97, 193
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	134, 202
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	209
BseX3I	CGGCCG	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	2 cut(s)	97, 193
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	773
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	66, 252, 511, 697
BspACI	CCGC	2 cut(s)	87, 416
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	135, 201
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	208
BspMAI	CTGCAG	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	4 cut(s)	66, 252, 511, 697
BssT1I	CCWWGG	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	261, 688
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	421, 459
BstDEI	CTNAG	3 cut(s)	143, 188, 702
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	5 cut(s)	114, 319, 508, 556, 570
BstFNI	CGCG	1 cut(s)	416
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	4 cut(s)	69, 255, 514, 700
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	66, 252, 511, 697
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 93, 145, 463
BstPAI	GACNNNNGTC	1 cut(s)	620
BstSFI	CTRYAG	1 cut(s)	300
BstUI	CGCG	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	697
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	697
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	5 cut(s)	114, 319, 508, 556, 570
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	3 cut(s)	43, 196, 297
Cac8I	GCNNGC	2 cut(s)	421, 459
CfoI	GCGC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	386
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	3 cut(s)	143, 188, 702
DpnI	GATC	4 cut(s)	68, 254, 513, 699
DpnII	GATC	4 cut(s)	66, 252, 511, 697
DrdI	GACNNNNNNGTC	1 cut(s)	683
DriI	GACNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	683
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	261, 688
Eam1105I	GACNNNNNGTC	1 cut(s)	536
EarI	CTCTTC	2 cut(s)	261, 688
Ecl136II	GAGCTC	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	81
Eco52I	CGGCCG	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	1 cut(s)	389
FaiI	YATR	9 cut(s)	7, 25, 36, 218, 222, 387, 425, 584, 648
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	1 cut(s)	385
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	88, 417
FokI	GGATG	5 cut(s)	101, 326, 515, 557, 563
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	88, 417
FspBI	CTAG	2 cut(s)	83, 420
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	2 cut(s)	88, 417
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	4 cut(s)	176, 516, 590, 741
HphI	GGTGA	5 cut(s)	21, 46, 262, 356, 467
Hpy166II	GTNNAC	3 cut(s)	54, 100, 184
Hpy188I	TCNGA	3 cut(s)	144, 542, 692
Hpy188III	TCNNGA	5 cut(s)	70, 319, 329, 378, 734
Hpy8I	GTNNAC	3 cut(s)	54, 100, 184
HpyAV	CCTTC	1 cut(s)	241
HpyCH4IV	ACGT	2 cut(s)	132, 262
HpyCH4V	TGCA	5 cut(s)	23, 38, 283, 302, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 93, 145, 463
HpyF3I	CTNAG	3 cut(s)	143, 188, 702
HpySE526I	ACGT	2 cut(s)	132, 262
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	66, 252, 511, 697
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	4 cut(s)	31, 443, 492, 747
LweI	GCATC	2 cut(s)	270, 474
MaeI	CTAG	2 cut(s)	83, 420
MaeII	ACGT	2 cut(s)	132, 262
MalI	GATC	4 cut(s)	68, 254, 513, 699
MboI	GATC	4 cut(s)	66, 252, 511, 697
MboII	GAAGA	5 cut(s)	278, 289, 298, 317, 705
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	5 cut(s)	236, 358, 371, 545, 706
MlyI	GAGTC	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	520
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	20, 93, 145, 463
NdeII	GATC	4 cut(s)	66, 252, 511, 697
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	1 cut(s)	208
PfeI	GAWTC	3 cut(s)	176, 590, 741
PkrI	GCNGC	2 cut(s)	89, 418
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	133
PshAI	GACNNNNGTC	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	208
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	88, 417
Sau3AI	GATC	4 cut(s)	66, 252, 511, 697
SchI	GAGTC	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	2 cut(s)	270, 474
SfcI	CTRYAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	5 cut(s)	236, 358, 371, 545, 706
SsiI	CCGC	2 cut(s)	87, 416
SspMI	CTAG	2 cut(s)	83, 420
SstI	GAGCTC	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	82
TaiI	ACGT	2 cut(s)	135, 265
TaqI	TCGA	3 cut(s)	202, 231, 514
TasI	AATT	5 cut(s)	236, 358, 371, 545, 706
TauI	GCSGC	2 cut(s)	90, 419
TfiI	GAWTC	3 cut(s)	176, 590, 741
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	3 cut(s)	50, 196, 304
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	3 cut(s)	50, 196, 304
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	2 cut(s)	358, 371
XmaJI	CCTAGG	1 cut(s)	82
XspI	CTAG	2 cut(s)	83, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.