Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030156

Physical Location & Seq

Genomic Coordinates Reverse (-)

68578169 .. 68578531

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTTATACTTTTGGATTACTGTACAGGGTCACAACATTATTTTGATATCAAATCATCAAACTAAAGCAGATCCAGCTGTCATTGCCTTGTTACTTGAAACAACAAACCCACATCTTGCTAAGAAAATGACCTGCATAGCAGGAGATATAGTTGTGACAGATCCTCTTAGCAAGCCTTTAGCATTGGAAGGTGCTTGTGAAGTTCTTAGACATGCTATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase GPAT_N

Protein Analysis

74

Amino Acids

8.09

Weight (kDa)

6.38

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	9 - 61	9.7e-07	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030156)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0062811
rosa_samantha	Rh5BG427200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	65, 155
AfaI	GTAC	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
AlwI	GGATC	2 cut(s)	65, 155
BfuAI	ACCTGC	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse3DI	GCAATG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	70, 160
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	65, 155
BsrDI	GCAATG	1 cut(s)	81
BsrGI	TGTACA	1 cut(s)	22
BssMI	GATC	2 cut(s)	70, 160
Bst4CI	ACNGT	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	120, 167, 206
BstKTI	GATC	2 cut(s)	73, 163
BstMBI	GATC	2 cut(s)	70, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 83
BstNSI	RCATGY	1 cut(s)	215
BstX2I	RGATCY	2 cut(s)	70, 160
BstYI	RGATCY	2 cut(s)	70, 160
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	2 cut(s)	77, 175
CviKI_1	RGCY	2 cut(s)	77, 175
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	3 cut(s)	120, 167, 206
DpnI	GATC	2 cut(s)	72, 162
DpnII	GATC	2 cut(s)	70, 160
Eco32I	GATATC	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	48
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	7, 137, 149, 213, 218
FatI	CATG	1 cut(s)	211
Hin1II	CATG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 83
HpyF3I	CTNAG	3 cut(s)	120, 167, 206
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	70, 160
LpnPI	CCDG	4 cut(s)	11, 87, 126, 145
MaeIII	GTNAC	3 cut(s)	29, 90, 154
MalI	GATC	2 cut(s)	72, 162
MboI	GATC	2 cut(s)	70, 160
MflI	RGATCY	2 cut(s)	70, 160
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	74, 83
NdeII	GATC	2 cut(s)	70, 160
NlaIII	CATG	1 cut(s)	215
NmuCI	GTSAC	2 cut(s)	29, 154
NspI	RCATGY	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	70, 160
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
Sau3AI	GATC	2 cut(s)	70, 160
SetI	ASST	3 cut(s)	79, 134, 193
SgeI	CNNG	9 cut(s)	38, 86, 100, 107, 128, 144, 153, 184, 207
Sse9I	AATT	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	29, 154
Tsp45I	GTSAC	2 cut(s)	29, 154
XceI	RCATGY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.