Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0030156

Physical Location & Seq

Genomic Coordinates Reverse (-)

69126842 .. 69130951

Gene Structure 4110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG427200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCAGCTTCAGGAGAAGGTCACAACATTATTTTGATATCAAATCACCAAACTAAAGCAGATCCAGCTGTCATTGCCTTGTTACTTGAAACAACAAACCCACATCTTGCTAAGAAAATGACCTGCATAGCAGGAGATATAGTTGTGACAGATCCTCTTTGCAAGCCTTCAGCATTGGAAGACTTTAGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase GPAT_N

Protein Analysis

64

Amino Acids

6.73

Weight (kDa)

5.33

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	6 - 56	1.2e-06	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030156)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0062811
rosa_samantha	Rh5BG427200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	131
AclWI	GGATC	2 cut(s)	56, 146
AcuI	CTGAAG	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	89
AluBI	AGCT	2 cut(s)	8, 68
AluI	AGCT	2 cut(s)	8, 68
AlwI	GGATC	2 cut(s)	56, 146
ApeKI	GCWGC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse3DI	GCAATG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	61, 151
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	56, 146
BsrDI	GCAATG	1 cut(s)	72
BssMI	GATC	2 cut(s)	61, 151
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	64, 154
BstMBI	GATC	2 cut(s)	61, 151
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 74
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	61, 151
BstYI	RGATCY	2 cut(s)	61, 151
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	164
CviJI	RGCY	3 cut(s)	8, 68, 166
CviKI_1	RGCY	3 cut(s)	8, 68, 166
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	63, 153
DpnII	GATC	2 cut(s)	61, 151
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	39
FaiI	YATR	2 cut(s)	128, 140
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	193
GluI	GCNGC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	11, 177
HpyCH4V	TGCA	2 cut(s)	126, 162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 74
HpyF3I	CTNAG	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	61, 151
LpnPI	CCDG	3 cut(s)	78, 117, 136
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	193
MaeIII	GTNAC	3 cut(s)	20, 81, 145
MalI	GATC	2 cut(s)	63, 153
MboI	GATC	2 cut(s)	61, 151
MboII	GAAGA	1 cut(s)	191
MflI	RGATCY	2 cut(s)	61, 151
MnlI	CCTC	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	65, 74
NdeII	GATC	2 cut(s)	61, 151
NmuCI	GTSAC	2 cut(s)	20, 145
PkrI	GCNGC	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	61, 151
PvuII	CAGCTG	1 cut(s)	68
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	61, 151
SetI	ASST	4 cut(s)	10, 22, 70, 125
SgeI	CNNG	8 cut(s)	24, 77, 91, 98, 119, 135, 144, 175
SspMI	CTAG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	20, 145
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	20, 145
XspI	CTAG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.