Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030277

Physical Location & Seq

Genomic Coordinates Forward (+)

69856036 .. 69856230

Gene Structure 195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34012

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGATTTTAAATGGTGTTGTTGAAGCTGATGGAGTTACTACTGAAGCAGCAGCAAATCAAGAGGACAAAGCTGCAAAAAAGAGAGGAGTGTGTGATTTCTCCCTCAATGCACTAAAGAATGATGACATGCTGGCCAATGAGATCACTAAGCATGATGAAGGTGCTTTTAAATATCTCAGACATAAAGTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

64

Amino Acids

7.0

Weight (kDa)

5.54

Isoelectric Point (pI)

26.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	14 - 60	1.7e-07	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0030277)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0064051
rosa_samantha	Rh5BG436100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	2 cut(s)	26, 71
AluI	AGCT	2 cut(s)	26, 71
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	47, 50, 71
BalI	TGGCCA	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	58, 59, 62
BccI	CCATC	1 cut(s)	23
BisI	GCNGC	3 cut(s)	48, 51, 72
BlsI	GCNGC	3 cut(s)	49, 52, 73
BseMII	CTCAG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	3 cut(s)	58, 59, 62
BshFI	GGCC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	189
BssMI	GATC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	147, 176
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	58, 59, 62
BsuRI	GGCC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	132
CviAII	CATG	2 cut(s)	127, 152
CviJI	RGCY	3 cut(s)	26, 71, 134
CviKI_1	RGCY	3 cut(s)	26, 71, 134
DdeI	CTNAG	2 cut(s)	147, 176
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
DraI	TTTAAA	2 cut(s)	9, 169
EaeI	YGGCCR	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	63
FaeI	CATG	2 cut(s)	130, 155
FaiI	YATR	3 cut(s)	128, 153, 183
FatI	CATG	2 cut(s)	126, 151
Fnu4HI	GCNGC	3 cut(s)	48, 51, 72
Fsp4HI	GCNGC	3 cut(s)	48, 51, 72
FspEI	CC	9 cut(s)	15, 47, 69, 115, 116, 116, 144, 148, 173
GluI	GCNGC	3 cut(s)	48, 51, 72
HaeIII	GGCC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	130, 155
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	74, 110
HpyF3I	CTNAG	2 cut(s)	147, 176
Hsp92II	CATG	2 cut(s)	130, 155
Kzo9I	GATC	1 cut(s)	141
LpnPI	CCDG	1 cut(s)	116
Lsp1109I	GCAGC	3 cut(s)	58, 59, 62
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	134
MnlI	CCTC	3 cut(s)	55, 77, 113
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	2 cut(s)	8, 168
Msp20I	TGGCCA	1 cut(s)	134
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	2 cut(s)	130, 155
NspI	RCATGY	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	49, 52, 73
SaqAI	TTAA	2 cut(s)	8, 168
SatI	GCNGC	3 cut(s)	48, 51, 72
Sau3AI	GATC	1 cut(s)	141
SetI	ASST	3 cut(s)	28, 73, 163
SgeI	CNNG	4 cut(s)	71, 139, 143, 164
Tru1I	TTAA	2 cut(s)	8, 168
Tru9I	TTAA	2 cut(s)	8, 168
TseI	GCWGC	3 cut(s)	47, 50, 71
TspDTI	ATGAA	1 cut(s)	171
XceI	RCATGY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.