Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0030277

Physical Location & Seq

Genomic Coordinates Forward (+)

70202911 .. 70203991

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG436100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCAAGGGCAACAACGAAGGCTGGCTGCTGCGGGGAGCTGCTGTGTGGATGCGCGGGCTGCAAGGCATGCTGCAGGTGCGTGGGCAGTTCGCGGCTTGGGCTGCTGGGGTCAGGACGTAGGGGAGCAGCGCAGGCAGCAGGCGAGGAGGTTGAGGCGTGCGGCAGGAGGTTGCTGCAGGAGATATGGCAGTGGGCTGCATGCGGCAGGAGGCTGCTTGCGAAAGAGATATATGATTGTAAATGGTGTTGTTGAAGCTGATGGAGTTACTACTGAAGCAGCAGCAAATCAAGAGGACAAAGCTGCAAAAAAGAGAGGAGTGTGTGATTTCTCCCTCAATGCACTAAAGAATGATGACGTGCTGGCCAATGAGATCACTAAGCATGATGAAGGAGCTCTTAAATATCTCAGACATAAAGTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

141

Amino Acids

15.22

Weight (kDa)

9.75

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	73 - 137	8.8e-09	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0030277)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0064051
rosa_samantha	Rh5BG436100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	65
AccII	CGCG	2 cut(s)	55, 93
AciI	CCGC	5 cut(s)	32, 55, 93, 161, 203
AcoI	YGGCCR	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	254
AjiI	CACGTC	1 cut(s)	358
AluBI	AGCT	4 cut(s)	39, 257, 302, 395
AluI	AGCT	4 cut(s)	39, 257, 302, 395
Alw21I	GWGCWC	1 cut(s)	397
AoxI	GGCC	1 cut(s)	363
AspLEI	GCGC	2 cut(s)	55, 132
BalI	TGGCCA	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	397
BccI	CCATC	1 cut(s)	254
BfmI	CTRYAG	2 cut(s)	72, 175
BfuAI	ACCTGC	1 cut(s)	65
BmgBI	CACGTC	1 cut(s)	358
BmsI	GCATC	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
BseGI	GGATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	421
BseRI	GAGGAG	2 cut(s)	160, 330
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	2 cut(s)	55, 93
BshFI	GGCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	5 cut(s)	32, 55, 93, 161, 203
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	420
BspFNI	CGCG	2 cut(s)	55, 93
BspMAI	CTGCAG	2 cut(s)	76, 179
BspMI	ACCTGC	1 cut(s)	65
BssMI	GATC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	9 cut(s)	24, 57, 69, 134, 141, 159, 201, 218, 363
BstDEI	CTNAG	2 cut(s)	378, 407
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	2 cut(s)	55, 93
BstHHI	GCGC	2 cut(s)	55, 132
BstKTI	GATC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 68, 77, 99, 102, 133, 136
BstNSI	RCATGY	2 cut(s)	71, 203
BstSFI	CTRYAG	2 cut(s)	72, 175
BstUI	CGCG	2 cut(s)	55, 93
BsuRI	GGCC	1 cut(s)	365
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	9 cut(s)	24, 57, 69, 134, 141, 159, 201, 218, 363
CfoI	GCGC	2 cut(s)	55, 132
CviAII	CATG	3 cut(s)	68, 200, 383
DdeI	CTNAG	2 cut(s)	378, 407
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	3 cut(s)	71, 203, 386
FaiI	YATR	7 cut(s)	69, 186, 201, 231, 233, 384, 414
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	3 cut(s)	67, 199, 382
FauI	CCCGC	2 cut(s)	25, 48
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	397
GlaI	GCGC	2 cut(s)	54, 131
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	55, 132
Hin1II	CATG	3 cut(s)	71, 203, 386
Hin6I	GCGC	2 cut(s)	53, 130
HinP1I	GCGC	2 cut(s)	53, 130
Hpy188I	TCNGA	1 cut(s)	410
Hpy188III	TCNNGA	2 cut(s)	113, 290
HpyAV	CCTTC	2 cut(s)	12, 383
HpyCH4IV	ACGT	2 cut(s)	117, 357
HpyCH4V	TGCA	7 cut(s)	4, 62, 74, 177, 199, 305, 341
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 68, 77, 99, 102, 133, 136
HpyF3I	CTNAG	2 cut(s)	378, 407
HpySE526I	ACGT	2 cut(s)	117, 357
Hsp92II	CATG	3 cut(s)	71, 203, 386
HspAI	GCGC	2 cut(s)	53, 130
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	3 cut(s)	36, 124, 392
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	2 cut(s)	117, 357
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	365
MnlI	CCTC	8 cut(s)	138, 141, 147, 161, 203, 286, 308, 344
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	365
MvnI	CGCG	2 cut(s)	55, 93
MwoI	GCNNNNNNNGC	7 cut(s)	59, 68, 77, 99, 102, 133, 136
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	3 cut(s)	71, 203, 386
NspI	RCATGY	2 cut(s)	71, 203
PaeI	GCATGC	2 cut(s)	71, 203
PaqCI	CACCTGC	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	105
PstI	CTGCAG	2 cut(s)	76, 179
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	399
Sau3AI	GATC	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	9 cut(s)	41, 79, 120, 152, 172, 259, 304, 360, 397
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	2 cut(s)	72, 175
SphI	GCATGC	2 cut(s)	71, 203
SsiI	CCGC	5 cut(s)	32, 55, 93, 161, 203
SstI	GAGCTC	1 cut(s)	397
TaiI	ACGT	2 cut(s)	120, 360
TauI	GCSGC	3 cut(s)	96, 164, 206
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	196
XceI	RCATGY	2 cut(s)	71, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.