RchiOBHm_Chr5g0064711

Nucleolar protein 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0024700
Physical Location & Seq
Reverse (-)
70621534 .. 70625287
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34067

Sequence Viewer

Length: 387 bp
ATGACAAAGGAGAGGTTGCCTTTCAAAGAATCATTTCCAGTTGTTACATGTACATCATCTAGAAGCTTTAATTTAGCCTTCCGGATAACAAGGGTTGGATTTCTCAAGGTATTGTTGAGCCTAAAGGTGAAGAGTTCAGTTTATGTATGGGGATTTTGCTTCGATTGTTGGAGAGTGTATCAGCAGAAGGTTCATAATGTTTTTAGTCATGGGTTGAGTGACCGATTGAAGACTGTATGTGTGACCTGGGAAAGCATGTTATCAGAACCCATTCTACAAAATGGATTGTTGACACACAATACAGAGCCACTGCTAATTGGAATTTCAGTGAGCTCTTCAGATAAAGCTTTTAGAATTGTTGATATTGGTCCTGATGTTGATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Nrap Nrap_D2 Nrap_D3 Nrap_D4 Nrap_D5 Nrap_D6

Protein Analysis

128

Amino Acids

14.57

Weight (kDa)

9.21

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nrap_D3 PF17404 55 - 126 1.5e-06 Nrap protein domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024700)

Species Orthologous Gene IDs
pyrus_communis pycom15g22830
rosa_chinensis RchiOBHm_Chr5g0064711
rosa_samantha Rh5AG424300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 81
AcsI RAATTY 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 2 cut(s) 25, 229
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 3 cut(s) 66, 333, 347
AluI AGCT 3 cut(s) 66, 333, 347
Alw21I GWGCWC 1 cut(s) 335
Aor13HI TCCGGA 1 cut(s) 81
ApoI RAATTY 1 cut(s) 321
Asp700I GAANNNNTTC 2 cut(s) 33, 270
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 247
BfaI CTAG 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 38
BseAI TCCGGA 1 cut(s) 81
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 50
BspEI TCCGGA 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 125, 340
BstAUI TGTACA 1 cut(s) 50
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 2 cut(s) 51, 259
BstSCI CCNGG 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 2 cut(s) 308, 333
Cfr13I GGNCC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 51
CviAII CATG 3 cut(s) 48, 209, 256
CviJI RGCY 6 cut(s) 66, 77, 120, 307, 333, 347
CviKI_1 RGCY 6 cut(s) 66, 77, 120, 307, 333, 347
CviQI GTAC 1 cut(s) 51
Eam1104I CTCTTC 2 cut(s) 125, 340
EarI CTCTTC 2 cut(s) 125, 340
Ecl136II GAGCTC 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 335
FaeI CATG 3 cut(s) 51, 212, 259
FaiI YATR 7 cut(s) 49, 144, 148, 195, 210, 238, 257
FatI CATG 3 cut(s) 47, 208, 255
FriOI GRGCYC 1 cut(s) 335
FspBI CTAG 1 cut(s) 60
HapII CCGG 1 cut(s) 82
Hin1II CATG 3 cut(s) 51, 212, 259
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HindIII AAGCTT 2 cut(s) 64, 345
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 82
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 265, 340
Hpy188III TCNNGA 3 cut(s) 60, 82, 371
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 88, 181
HpyCH4III ACNGT 1 cut(s) 235
Hsp92II CATG 3 cut(s) 51, 212, 259
Kpn2I TCCGGA 1 cut(s) 81
LguI GCTCTTC 1 cut(s) 340
LpnPI CCDG 4 cut(s) 51, 95, 232, 259
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 43, 218, 241
MboII GAAGA 3 cut(s) 142, 241, 327
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 4 cut(s) 70, 315, 321, 354
MmeI TCCRAC 2 cut(s) 76, 149
MnlI CCTC 1 cut(s) 6
MroI TCCGGA 1 cut(s) 81
MroXI GAANNNNTTC 2 cut(s) 33, 270
MseI TTAA 1 cut(s) 69
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
NlaIII CATG 3 cut(s) 51, 212, 259
NmuCI GTSAC 2 cut(s) 218, 241
NspI RCATGY 2 cut(s) 51, 259
PciI ACATGT 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 340
PdmI GAANNNNTTC 2 cut(s) 33, 270
PfeI GAWTC 1 cut(s) 29
PscI ACATGT 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspPI GGNCC 1 cut(s) 368
PsrI GAACNNNNNNTAC 2 cut(s) 258, 290
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SacI GAGCTC 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 340
SaqAI TTAA 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 1 cut(s) 335
SetI ASST 8 cut(s) 17, 68, 111, 129, 192, 248, 335, 349
SinI GGWCC 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 4 cut(s) 70, 315, 321, 354
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 162
TaqII GACCGA 1 cut(s) 237
TasI AATT 4 cut(s) 70, 315, 321, 354
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 2 cut(s) 315, 333
TseFI GTSAC 2 cut(s) 218, 241
Tsp45I GTSAC 2 cut(s) 218, 241
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 2 cut(s) 315, 333
VpaK11BI GGWCC 1 cut(s) 368
XapI RAATTY 1 cut(s) 321
XbaI TCTAGA 1 cut(s) 59
XceI RCATGY 2 cut(s) 51, 259
XmnI GAANNNNTTC 2 cut(s) 33, 270
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.