Rh5AG424300

Nucleolar protein 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0024700
Physical Location & Seq
Reverse (-)
73215615 .. 73219563
3949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG424300.1

Sequence Viewer

Length: 321 bp
ATGACAAAGGAGAGGTTGCCTTTCAAAGAATCATTTCCAGTTGTTACATGTACATCATCTAGAAGCTTTAATTTAGCCTTCCGGATAACAAGGGTTGGATTTCTCGAGCTCCAAAATGAATCTGCAATGACACTGGCATGCATAGAGAAATTCAGAGATAGTGGATTTGAGGAAATTTTTATGCCCAGGATTGACTGTCCTGTAAAATATGACCATGTCATAAGGGGAAGAGTTCAGTTTATGTATGGGGATTTTGCTTCGATGATGAATGTTGGAGAGTGTATCAGCAGAAGGTTTATAATGTTTTTAGTCATGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Nrap Nrap_D2 Nrap_D3 Nrap_D4 Nrap_D5 Nrap_D6

Protein Analysis

106

Amino Acids

12.36

Weight (kDa)

8.45

Isoelectric Point (pI)

64.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nrap_D2 PF17403 8 - 61 2.1e-08 Nrap protein PAP/OAS-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024700)

Species Orthologous Gene IDs
pyrus_communis pycom15g22830
rosa_chinensis RchiOBHm_Chr5g0064711
rosa_samantha Rh5AG424300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AccIII TCCGGA 1 cut(s) 81
AcsI RAATTY 2 cut(s) 149, 174
AfaI GTAC 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 2 cut(s) 66, 109
AluI AGCT 2 cut(s) 66, 109
Alw21I GWGCWC 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 104
Aor13HI TCCGGA 1 cut(s) 81
ApoI RAATTY 2 cut(s) 149, 174
Asp700I GAANNNNTTC 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 104
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 187
BfaI CTAG 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 185
BsaWI WCCGGW 1 cut(s) 81
Bse1I ACTGG 2 cut(s) 38, 138
Bse3DI GCAATG 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 81
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 38, 138
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 50
BspEI TCCGGA 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 2 cut(s) 38, 138
BssECI CCNNGG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 223
BstAUI TGTACA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 2 cut(s) 51, 141
BstSCI CCNGG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 51
CviAII CATG 4 cut(s) 48, 138, 215, 313
CviJI RGCY 3 cut(s) 66, 77, 109
CviKI_1 RGCY 3 cut(s) 66, 77, 109
CviQI GTAC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 4 cut(s) 51, 141, 218, 316
FatI CATG 4 cut(s) 47, 137, 214, 312
FriOI GRGCYC 1 cut(s) 111
FspBI CTAG 1 cut(s) 60
HapII CCGG 1 cut(s) 82
Hin1II CATG 4 cut(s) 51, 141, 218, 316
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 2 cut(s) 29, 119
HpaII CCGG 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 3 cut(s) 60, 82, 104
HpyAV CCTTC 2 cut(s) 88, 285
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 2 cut(s) 125, 141
Hsp92II CATG 4 cut(s) 51, 141, 218, 316
Kpn2I TCCGGA 1 cut(s) 81
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 6 cut(s) 51, 95, 119, 172, 199, 213
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 43
MboII GAAGA 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 3 cut(s) 70, 149, 174
MmeI TCCRAC 2 cut(s) 76, 253
MnlI CCTC 2 cut(s) 6, 163
Mph1103I ATGCAT 1 cut(s) 143
MroI TCCGGA 1 cut(s) 81
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 136
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
NlaIII CATG 4 cut(s) 51, 141, 218, 316
NsiI ATGCAT 1 cut(s) 143
NspI RCATGY 2 cut(s) 51, 141
PaeI GCATGC 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 104
PciI ACATGT 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 29, 119
PflFI GACNNNGTC 1 cut(s) 215
PscI ACATGT 1 cut(s) 47
PsiI TTATAA 1 cut(s) 299
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 136
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 111
SetI ASST 4 cut(s) 17, 68, 111, 296
Sfr274I CTCGAG 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SphI GCATGC 1 cut(s) 141
Sse9I AATT 3 cut(s) 70, 149, 174
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 197
TaqI TCGA 2 cut(s) 105, 260
TasI AATT 3 cut(s) 70, 149, 174
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 2 cut(s) 29, 119
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 132, 281
TspRI CASTG 1 cut(s) 138
Tth111I GACNNNGTC 1 cut(s) 215
XapI RAATTY 2 cut(s) 149, 174
XbaI TCTAGA 1 cut(s) 59
XceI RCATGY 2 cut(s) 51, 141
XhoI CTCGAG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 60
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.