Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030210

Physical Location & Seq

Genomic Coordinates Reverse (-)

78770434 .. 78772097

Gene Structure 1664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCATGATGTAGATTATAACAATTTCTTCTATATATATATTGATCAGTTACTCTTAATTTGGTCATTTTTGATTCTGCTTCAAGCATATATAATGCATTTAATCATTCTTTTATGGCTTGCGCTAGACAAAGATCAGAAGAAGCTTTCCATTGAATGCACAGCTAATCAGGATCCACTGATAATTAAAGGAGCGAATTATGTTCCTCTGCTCGGGATAGATGTGTGGGAGCATGCTTACTACTTGCAGTACAAAAACGTCAGGCCAGACTATCTGAAGTATATATGGGAGGTTATTAACTGGAAATATGCAAGTGAAGTGTATGAGAAAGAGTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0031974 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

113

Amino Acids

13.77

Weight (kDa)

4.97

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_C	PF02777	38 - 106	8.1e-24	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030210)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0072711
rosa_samantha	Rh5AG476400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AclWI	GGATC	2 cut(s)	167, 180
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	83, 155
AluBI	AGCT	2 cut(s)	145, 164
AluI	AGCT	2 cut(s)	145, 164
AlwI	GGATC	2 cut(s)	167, 180
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	43
BfaI	CTAG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	43, 133, 172
BspANI	GGCC	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	167, 180
BsrI	ACTGG	1 cut(s)	305
BssMI	GATC	3 cut(s)	43, 133, 172
BstC8I	GCNNGC	2 cut(s)	120, 234
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	3 cut(s)	46, 136, 175
BstMBI	GATC	3 cut(s)	43, 133, 172
BstNSI	RCATGY	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	120, 234
CfoI	GCGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	5, 233
CviJI	RGCY	4 cut(s)	118, 145, 164, 265
CviKI_1	RGCY	4 cut(s)	118, 145, 164, 265
CviQI	GTAC	1 cut(s)	250
DpnI	GATC	3 cut(s)	45, 135, 174
DpnII	GATC	3 cut(s)	43, 133, 172
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	212
EcoT22I	ATGCAT	2 cut(s)	6, 99
FaeI	CATG	2 cut(s)	8, 236
FatI	CATG	2 cut(s)	4, 232
FbaI	TGATCA	1 cut(s)	43
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	8, 236
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	138, 276
Hpy188III	TCNNGA	2 cut(s)	170, 214
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	4, 97, 159, 247, 311
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	8, 236
HspAI	GCGC	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	43, 133, 172
LmnI	GCTCC	2 cut(s)	191, 229
LpnPI	CCDG	4 cut(s)	155, 247, 279, 286
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	3 cut(s)	45, 135, 174
MboI	GATC	3 cut(s)	43, 133, 172
MboII	GAAGA	2 cut(s)	19, 151
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	4 cut(s)	22, 57, 183, 196
MnlI	CCTC	2 cut(s)	216, 283
Mph1103I	ATGCAT	2 cut(s)	6, 99
MseI	TTAA	4 cut(s)	56, 101, 186, 297
Mva1269I	GAATGC	1 cut(s)	161
NdeII	GATC	3 cut(s)	43, 133, 172
NlaIII	CATG	2 cut(s)	8, 236
NlaIV	GGNNCC	1 cut(s)	174
NsiI	ATGCAT	2 cut(s)	6, 99
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	4 cut(s)	56, 101, 186, 297
Sau3AI	GATC	3 cut(s)	43, 133, 172
SetI	ASST	4 cut(s)	147, 166, 261, 294
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	4 cut(s)	22, 57, 183, 196
SspMI	CTAG	1 cut(s)	125
TaiI	ACGT	1 cut(s)	261
TasI	AATT	4 cut(s)	22, 57, 183, 196
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	4 cut(s)	56, 101, 186, 297
Tru9I	TTAA	4 cut(s)	56, 101, 186, 297
TscAI	CASTG	1 cut(s)	183
TspRI	CASTG	1 cut(s)	183
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	1 cut(s)	125
Zsp2I	ATGCAT	2 cut(s)	6, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.