Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0030210

Physical Location & Seq

Genomic Coordinates Reverse (-)

81825004 .. 81825563

Gene Structure 560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG476400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTTGGCTAATGAAAACTTTGTGCAGGATCCACTGATAATTAAAGGAGCGAATTATGTTCCTCTGCTCGGGATAGATGTGTGGGAGCATGCTTACTACTTGCAGTACAAAAACGTCAGGCCAGACTATCTGAAGTATATATGGGAGGTTATTAACTGGAAATATGCAAGTGAAGTGTATGAGAAAGAGTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0031974 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

65

Amino Acids

7.92

Weight (kDa)

4.87

Isoelectric Point (pI)

17.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_C	PF02777	9 - 58	5.6e-19	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030210)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0072711
rosa_samantha	Rh5AG476400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	23, 36
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	68
AlwI	GGATC	2 cut(s)	23, 36
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	161
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	121
BsoBI	CYCGRG	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	23, 36
BsrI	ACTGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	2 cut(s)	8, 121
CviKI_1	RGCY	2 cut(s)	8, 121
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	68
FaeI	CATG	1 cut(s)	92
FaiI	YATR	7 cut(s)	57, 90, 138, 140, 142, 165, 180
FatI	CATG	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	25, 103, 167
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	47, 85
LpnPI	CCDG	4 cut(s)	11, 103, 135, 142
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	2 cut(s)	39, 52
MnlI	CCTC	2 cut(s)	72, 139
MseI	TTAA	2 cut(s)	42, 153
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	42, 153
Sau3AI	GATC	1 cut(s)	28
SetI	ASST	2 cut(s)	117, 150
SgeI	CNNG	9 cut(s)	38, 80, 82, 101, 112, 130, 134, 169, 180
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	2 cut(s)	39, 52
TaiI	ACGT	1 cut(s)	117
TasI	AATT	2 cut(s)	39, 52
TatI	WGTACW	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	42, 153
Tru9I	TTAA	2 cut(s)	42, 153
TscAI	CASTG	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	39
XceI	RCATGY	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.