divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0074271 |
| rosa_samantha | Rh5BG507800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 214 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 211 |
| AclWI | GGATC | 1 cut(s) | 41 |
| AcoI | YGGCCR | 1 cut(s) | 202 |
| AcsI | RAATTY | 1 cut(s) | 116 |
| AcuI | CTGAAG | 1 cut(s) | 232 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 211 |
| AgsI | TTSAA | 5 cut(s) | 101, 144, 159, 222, 333 |
| AjnI | CCWGG | 2 cut(s) | 253, 286 |
| AluBI | AGCT | 3 cut(s) | 238, 261, 273 |
| AluI | AGCT | 3 cut(s) | 238, 261, 273 |
| Alw26I | GTCTC | 1 cut(s) | 379 |
| AlwI | GGATC | 1 cut(s) | 41 |
| AoxI | GGCC | 2 cut(s) | 179, 202 |
| ApoI | RAATTY | 1 cut(s) | 116 |
| BalI | TGGCCA | 1 cut(s) | 204 |
| BbsI | GAAGAC | 2 cut(s) | 132, 210 |
| BciT130I | CCWGG | 2 cut(s) | 255, 288 |
| BcoDI | GTCTC | 1 cut(s) | 379 |
| BfaI | CTAG | 1 cut(s) | 20 |
| Bme1390I | CCNGG | 2 cut(s) | 255, 288 |
| BmrFI | CCNGG | 2 cut(s) | 255, 288 |
| BpiI | GAAGAC | 2 cut(s) | 132, 210 |
| BsaJI | CCNNGG | 1 cut(s) | 253 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 211 |
| BseBI | CCWGG | 2 cut(s) | 255, 288 |
| BseDI | CCNNGG | 1 cut(s) | 253 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BsgI | GTGCAG | 1 cut(s) | 41 |
| BshFI | GGCC | 2 cut(s) | 181, 204 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BsmAI | GTCTC | 1 cut(s) | 379 |
| BsnI | GGCC | 2 cut(s) | 181, 204 |
| Bsp143I | GATC | 1 cut(s) | 33 |
| BspANI | GGCC | 2 cut(s) | 181, 204 |
| BspPI | GGATC | 1 cut(s) | 41 |
| BspQI | GCTCTTC | 1 cut(s) | 325 |
| BssECI | CCNNGG | 1 cut(s) | 253 |
| BssMI | GATC | 1 cut(s) | 33 |
| Bst2UI | CCWGG | 2 cut(s) | 255, 288 |
| Bst6I | CTCTTC | 1 cut(s) | 325 |
| BstKTI | GATC | 1 cut(s) | 36 |
| BstMAI | GTCTC | 1 cut(s) | 379 |
| BstMBI | GATC | 1 cut(s) | 33 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 258 |
| BstNI | CCWGG | 2 cut(s) | 255, 288 |
| BstSCI | CCNGG | 2 cut(s) | 253, 286 |
| BstV2I | GAAGAC | 2 cut(s) | 132, 210 |
| BsuRI | GGCC | 2 cut(s) | 181, 204 |
| BtsI | GCAGTG | 1 cut(s) | 53 |
| BtsIMutI | CAGTG | 1 cut(s) | 53 |
| CviJI | RGCY | 8 cut(s) | 181, 204, 225, 238, 252, 261, 273, 318 |
| CviKI_1 | RGCY | 8 cut(s) | 181, 204, 225, 238, 252, 261, 273, 318 |
| DpnI | GATC | 1 cut(s) | 35 |
| DpnII | GATC | 1 cut(s) | 33 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 214 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 214 |
| EaeI | YGGCCR | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 1 cut(s) | 325 |
| EarI | CTCTTC | 1 cut(s) | 325 |
| Eco57I | CTGAAG | 1 cut(s) | 232 |
| EcoRII | CCWGG | 2 cut(s) | 253, 286 |
| FaiI | YATR | 2 cut(s) | 27, 212 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 115, 147 |
| FspBI | CTAG | 1 cut(s) | 20 |
| HaeIII | GGCC | 2 cut(s) | 181, 204 |
| HinfI | GANTC | 1 cut(s) | 347 |
| Hpy166II | GTNNAC | 1 cut(s) | 129 |
| Hpy188I | TCNGA | 2 cut(s) | 66, 386 |
| Hpy188III | TCNNGA | 1 cut(s) | 82 |
| Hpy8I | GTNNAC | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 3 cut(s) | 58, 122, 164 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 258 |
| Kzo9I | GATC | 1 cut(s) | 33 |
| LguI | GCTCTTC | 1 cut(s) | 325 |
| LpnPI | CCDG | 5 cut(s) | 218, 240, 267, 273, 300 |
| MaeI | CTAG | 1 cut(s) | 20 |
| MaeIII | GTNAC | 1 cut(s) | 107 |
| MalI | GATC | 1 cut(s) | 35 |
| MboI | GATC | 1 cut(s) | 33 |
| MboII | GAAGA | 5 cut(s) | 132, 210, 238, 285, 312 |
| MfeI | CAATTG | 1 cut(s) | 159 |
| MlsI | TGGCCA | 1 cut(s) | 204 |
| MluCI | AATT | 5 cut(s) | 72, 116, 153, 159, 333 |
| MluNI | TGGCCA | 1 cut(s) | 204 |
| MlyI | GAGTC | 1 cut(s) | 356 |
| MnlI | CCTC | 1 cut(s) | 171 |
| Mox20I | TGGCCA | 1 cut(s) | 204 |
| MscI | TGGCCA | 1 cut(s) | 204 |
| MseI | TTAA | 3 cut(s) | 71, 114, 308 |
| Msp20I | TGGCCA | 1 cut(s) | 204 |
| MspR9I | CCNGG | 2 cut(s) | 255, 288 |
| MunI | CAATTG | 1 cut(s) | 159 |
| MvaI | CCWGG | 2 cut(s) | 255, 288 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 258 |
| NdeII | GATC | 1 cut(s) | 33 |
| NmeAIII | GCCGAG | 1 cut(s) | 294 |
| NmuCI | GTSAC | 1 cut(s) | 107 |
| PciSI | GCTCTTC | 1 cut(s) | 325 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 211 |
| PleI | GAGTC | 1 cut(s) | 355 |
| PpsI | GAGTC | 1 cut(s) | 355 |
| Psp6I | CCWGG | 2 cut(s) | 253, 286 |
| PspGI | CCWGG | 2 cut(s) | 253, 286 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 274, 306 |
| SapI | GCTCTTC | 1 cut(s) | 325 |
| SaqAI | TTAA | 3 cut(s) | 71, 114, 308 |
| Sau3AI | GATC | 1 cut(s) | 33 |
| SchI | GAGTC | 1 cut(s) | 356 |
| ScrFI | CCNGG | 2 cut(s) | 255, 288 |
| SetI | ASST | 5 cut(s) | 128, 233, 240, 263, 275 |
| Sse9I | AATT | 5 cut(s) | 72, 116, 153, 159, 333 |
| SspMI | CTAG | 1 cut(s) | 20 |
| StyD4I | CCNGG | 2 cut(s) | 253, 286 |
| TasI | AATT | 5 cut(s) | 72, 116, 153, 159, 333 |
| Tru1I | TTAA | 3 cut(s) | 71, 114, 308 |
| Tru9I | TTAA | 3 cut(s) | 71, 114, 308 |
| TscAI | CASTG | 1 cut(s) | 60 |
| TseFI | GTSAC | 1 cut(s) | 107 |
| Tsp45I | GTSAC | 1 cut(s) | 107 |
| TspRI | CASTG | 1 cut(s) | 60 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 211 |
| XapI | RAATTY | 1 cut(s) | 116 |
| XspI | CTAG | 1 cut(s) | 20 |