Rh5BG507800

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0030255
Physical Location & Seq
Reverse (-)
80551094 .. 80554609
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG507800.1

Sequence Viewer

Length: 690 bp
ATGAAGCTCGGAAGGAACTCGAATACCGGATTGGATAGATACATAACCTCGTGGAAAACTCCACAAGACCCTTCTACTGGTGATTATTCCTTCAAGCTCGACTACCGCGGTTTCCCGGAGGCTTTCCTCCGGCAGAGACAGTCGATAAAGTACCGGAGCGGCCCCTGGAACGGGTTGAGTTTTAGCGGGGCTCCGGAGATGAACACCGCTAGCTCTAATGCTTCTGAACTAGATGGTGATGGGAAAACAAAACGCATAGTTATGAGCGTAGGCATTGTAGTTGGTATTGCCGTTCTGCTATCAGCTGGTCTTATTATCTGGTTCGTGCGGAGGAGGAGGAACTCGGGTAGCACCCTGAGGAGAGAATCAAAAGGTCCTCTTGAAAGAATTCGAAGCCAGGATTTTCTTCTAAACAGTGTGTTAGTCTCAATAGATACTTTGAGGCCAAACCAAGTTTTTATAAATGGCCAGACTATGGTGTCTTCAAGCCAAAGGTTTGAGCTTGGGTTCTTCAGCCCAGGAAGCTCAAAAATCAGCTTCTTGGGTATTCCTGGTTCTTCTTTAGCAAGTTTAACTCTCGGCTCTTCGGGGTTTTCAATTTCCACTAATGAGTCTTTGATTGTGTGGTCTGTGAATGTCTCTGTGGTCTTAAATAGTCCATATTGCAGCTCTTGGACAATGACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

229

Amino Acids

25.11

Weight (kDa)

10.18

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030255)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0074271
rosa_samantha Rh5BG507800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
AasI GACNNNNNNGTC 1 cut(s) 478
AccB7I CCANNNNNTGG 1 cut(s) 475
AccBSI CCGCTC 1 cut(s) 159
AccII CGCG 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 6 cut(s) 106, 108, 159, 186, 207, 328
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 496
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 4 cut(s) 77, 170, 171, 475
AgsI TTSAA 4 cut(s) 94, 383, 486, 597
AjnI CCWGG 4 cut(s) 164, 396, 517, 550
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 8 cut(s) 7, 97, 213, 305, 502, 525, 537, 669
AluI AGCT 8 cut(s) 7, 97, 213, 305, 502, 525, 537, 669
Alw26I GTCTC 3 cut(s) 130, 430, 643
Ama87I CYCGRG 1 cut(s) 343
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 3 cut(s) 160, 443, 466
ApeKI GCWGC 1 cut(s) 666
ApoI RAATTY 1 cut(s) 387
Asp700I GAANNNNTTC 1 cut(s) 387
AspS9I GGNCC 2 cut(s) 161, 374
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 92, 248
AsuII TTCGAA 1 cut(s) 391
AsuNHI GCTAGC 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 356
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 1 cut(s) 193
BauI CACGAG 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 678
BccI CCATC 2 cut(s) 227, 233
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 4 cut(s) 166, 398, 519, 552
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 3 cut(s) 130, 430, 643
BfaI CTAG 2 cut(s) 210, 230
BisI GCNGC 2 cut(s) 160, 667
BlsI GCNGC 2 cut(s) 161, 668
Bme1390I CCNGG 5 cut(s) 116, 166, 398, 519, 552
Bme18I GGWCC 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 2 cut(s) 161, 374
BmiI GGNNCC 2 cut(s) 163, 192
BmrFI CCNGG 5 cut(s) 116, 166, 398, 519, 552
BmtI GCTAGC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 474
Bpu14I TTCGAA 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 106, 164, 517
BsaWI WCCGGW 3 cut(s) 26, 153, 193
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 170, 171, 475
Bse1I ACTGG 1 cut(s) 82
Bse21I CCTNAGG 1 cut(s) 356
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 4 cut(s) 166, 398, 519, 552
BseDI CCNNGG 3 cut(s) 106, 164, 517
BseLI CCNNNNNNNGG 4 cut(s) 77, 170, 171, 475
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 3 cut(s) 346, 349, 373
BseXI GCAGC 1 cut(s) 678
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 3 cut(s) 162, 445, 468
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 5 cut(s) 27, 116, 130, 154, 194
BslI CCNNNNNNNGG 4 cut(s) 77, 170, 171, 475
BsmAI GTCTC 3 cut(s) 130, 430, 643
BsnI GGCC 3 cut(s) 162, 445, 468
BsoBI CYCGRG 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 193
BspACI CCGC 6 cut(s) 106, 108, 159, 186, 207, 328
BspANI GGCC 3 cut(s) 162, 445, 468
BspCNI CTCAG 1 cut(s) 348
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 163, 192
BspOI GCTAGC 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 589
BspT104I TTCGAA 1 cut(s) 391
BsrBI CCGCTC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 106, 164, 517
BssSI CACGAG 1 cut(s) 49
Bst2BI CACGAG 1 cut(s) 49
Bst2UI CCWGG 4 cut(s) 166, 398, 519, 552
Bst4CI ACNGT 2 cut(s) 141, 416
Bst6I CTCTTC 1 cut(s) 589
BstBI TTCGAA 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 356
BstDSI CCRYGG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 108
BstMAI GTCTC 3 cut(s) 130, 430, 643
BstMWI GCNNNNNNNGC 1 cut(s) 522
BstNI CCWGG 4 cut(s) 166, 398, 519, 552
BstSCI CCNGG 5 cut(s) 114, 164, 396, 517, 550
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 678
BstV2I GAAGAC 1 cut(s) 474
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 3 cut(s) 162, 445, 468
BtgI CCRYGG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 161, 374
Cfr42I CCGCGG 1 cut(s) 109
Csp6I GTAC 1 cut(s) 151
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 356
DrdI GACNNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
Eco24I GRGCYC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 496
Eco81I CCTNAGG 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 387
EcoRII CCWGG 4 cut(s) 164, 396, 517, 550
EcoT38I GRGCYC 1 cut(s) 193
FaiI YATR 6 cut(s) 44, 257, 263, 461, 476, 661
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 2 cut(s) 160, 667
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 2 cut(s) 160, 667
FspBI CTAG 2 cut(s) 210, 230
GluI GCNGC 2 cut(s) 160, 667
HaeIII GGCC 3 cut(s) 162, 445, 468
HapII CCGG 5 cut(s) 27, 116, 130, 154, 194
HinfI GANTC 2 cut(s) 365, 611
HpaII CCGG 5 cut(s) 27, 116, 130, 154, 194
HphI GGTGA 2 cut(s) 92, 248
Hpy188I TCNGA 3 cut(s) 11, 226, 689
Hpy188III TCNNGA 2 cut(s) 194, 380
HpyAV CCTTC 3 cut(s) 6, 81, 100
HpyCH4III ACNGT 2 cut(s) 141, 416
HpyCH4V TGCA 1 cut(s) 666
HpyF10VI GCNNNNNNNGC 1 cut(s) 522
HpyF3I CTNAG 1 cut(s) 356
Kpn2I TCCGGA 1 cut(s) 193
KspI CCGCGG 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 589
LmnI GCTCC 2 cut(s) 156, 196
Lsp1109I GCAGC 1 cut(s) 678
MaeI CTAG 2 cut(s) 210, 230
MbiI CCGCTC 1 cut(s) 159
MboII GAAGA 5 cut(s) 398, 474, 502, 549, 576
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 2 cut(s) 387, 597
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 1 cut(s) 620
MnlI CCTC 9 cut(s) 58, 112, 137, 324, 327, 330, 351, 387, 435
Mox20I TGGCCA 1 cut(s) 468
MroI TCCGGA 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 468
MseI TTAA 2 cut(s) 572, 650
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 2 cut(s) 108, 305
MspI CCGG 5 cut(s) 27, 116, 130, 154, 194
MspR9I CCNGG 5 cut(s) 116, 166, 398, 519, 552
MvaI CCWGG 4 cut(s) 166, 398, 519, 552
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 522
NciI CCSGG 1 cut(s) 116
NheI GCTAGC 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 163, 192
NmeAIII GCCGAG 1 cut(s) 558
NspV TTCGAA 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 475
PfoI TCCNGGA 1 cut(s) 114
PkrI GCNGC 2 cut(s) 161, 668
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PpuMI RGGWCCY 1 cut(s) 374
PsiI TTATAA 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 4 cut(s) 164, 396, 517, 550
PspGI CCWGG 4 cut(s) 164, 396, 517, 550
PspN4I GGNNCC 2 cut(s) 163, 192
PspPI GGNCC 2 cut(s) 161, 374
PspPPI RGGWCCY 1 cut(s) 374
PsrI GAACNNNNNNTAC 2 cut(s) 538, 570
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 260
SacII CCGCGG 1 cut(s) 109
SapI GCTCTTC 1 cut(s) 589
SaqAI TTAA 2 cut(s) 572, 650
SatI GCNGC 2 cut(s) 160, 667
Sau96I GGNCC 2 cut(s) 161, 374
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 5 cut(s) 116, 166, 398, 519, 552
SduI GDGCHC 1 cut(s) 193
Sfr303I CCGCGG 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 109
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 2 cut(s) 387, 597
SsiI CCGC 6 cut(s) 106, 108, 159, 186, 207, 328
SspMI CTAG 2 cut(s) 210, 230
StyD4I CCNGG 5 cut(s) 114, 164, 396, 517, 550
TaaI ACNGT 2 cut(s) 141, 416
TaqI TCGA 4 cut(s) 20, 99, 143, 391
TasI AATT 2 cut(s) 387, 597
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 2 cut(s) 572, 650
Tru9I TTAA 2 cut(s) 572, 650
TscAI CASTG 1 cut(s) 421
TseI GCWGC 1 cut(s) 666
TspDTI ATGAA 2 cut(s) 17, 215
TspRI CASTG 1 cut(s) 421
Van91I CCANNNNNTGG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 374
XapI RAATTY 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 2 cut(s) 210, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.