RchiOBHm_Chr5g0075601

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
81386932 .. 81387180
249 bp
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UTR
Exon/CDS
Intron
PRQ35031

Sequence Viewer

Length: 249 bp
ATGCAAATAGTCAGGCTCATATCTCAAGATCACATGAATAACAAGTTAGTGTTTTTTGGTTCAGTGAAACTTTCCCTCTTGTATTTTATCTATATATATATATATATATATATCATCCAGTCGAGGTGTTTGTCTCTGAGTTTTCCTGATTATTCCGAGTTATTATATTATTTCAGGCAATATGTGGGAAGGGCAGACTTTCAAGTATTTTGGGCAATGAATCAGCATGGATTTCTTGGGCAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.94

Weight (kDa)

8.79

Isoelectric Point (pI)

21.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025009)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0075601 RchiOBHm_Chr7g0240991
rosa_samantha Rh7AG496100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 222
BseGI GGATG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 118
BssMI GATC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 69
CviAII CATG 2 cut(s) 34, 227
CviJI RGCY 1 cut(s) 16
CviKI_1 RGCY 1 cut(s) 16
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
FaeI CATG 2 cut(s) 37, 230
FatI CATG 2 cut(s) 33, 226
FokI GGATG 1 cut(s) 101
Hin1II CATG 2 cut(s) 37, 230
HinfI GANTC 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 138, 157
Hpy188III TCNNGA 2 cut(s) 26, 146
HpyAV CCTTC 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 2 cut(s) 37, 230
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 131, 159, 160
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MnlI CCTC 2 cut(s) 86, 117
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 37, 230
PfeI GAWTC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 28
SetI ASST 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
TaqI TCGA 1 cut(s) 122
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 1 cut(s) 69
TspDTI ATGAA 2 cut(s) 50, 233
TspRI CASTG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.