RchiOBHm_Chr6g0246171
ERF Family

Belongs to the small GTPase superfamily. Arf family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
1939965 .. 1941759
1795 bp
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UTR
Exon/CDS
Intron
PRQ22066

Sequence Viewer

Length: 414 bp
ATGGTGGGAACACATTCGTGCAGCCTTTCTGAGCATCAATTGCAGGTTGTGATGCTTGGACTAGATGCGGCTGGTAAAACAACCATCCTTTACAAACTGCATATTGGAGAAGTCTTGTCAACTGTTCCTACAATAGGTTTTAATGTGGAAAAAGTTCAGTACAAGAATGTGATGTATATATCTGTTGATTTCGCTTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGGCAAGAGAAACTAAGGCCGCTCTGGAGGCATTACTTTAATAATACGGATGGACTGCCTGCTGGAGGTCAGAGTAAAATCTTGGTCTGTGAACATGTTCTCAAGACTTCCAAGAAAATTCATTACCAGAAGTTTGCAGGACTGACAGGCAATGAAATAGTTGTGGTACTGATATATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.37

Weight (kDa)

8.85

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 96 1.2e-30 ADP-ribosylation factor family
Roc PF08477 16 - 95 2.8e-11 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 16 - 95 1.6e-06 Ras family
DUF4057 PF13266 96 - 130 9e-07 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0030332)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0246171
rosa_samantha Rh2DG571600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 253
AciI CCGC 2 cut(s) 68, 251
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 2 cut(s) 161, 399
AfiI CCNNNNNNNGG 2 cut(s) 134, 296
AflIII ACRYGT 1 cut(s) 325
AleI CACNNNNGTG 1 cut(s) 16
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 348
Asp700I GAANNNNTTC 3 cut(s) 13, 153, 327
BbvI GCAGC 1 cut(s) 33
BccI CCATC 2 cut(s) 92, 275
BfaI CTAG 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 34
BisI GCNGC 3 cut(s) 22, 69, 251
BlsI GCNGC 3 cut(s) 23, 70, 252
BmsI GCATC 3 cut(s) 42, 43, 55
BpmI CTGGAG 2 cut(s) 277, 315
BpuEI CTTGAG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 296
Bse3DI GCAATG 1 cut(s) 388
BseGI GGATG 3 cut(s) 84, 229, 286
BseLI CCNNNNNNNGG 2 cut(s) 134, 296
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 40
BshFI GGCC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 134, 296
BsnI GGCC 1 cut(s) 250
BspACI CCGC 2 cut(s) 68, 251
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 124, 217
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 30, 245
BstENI CCTNNNNNAGG 2 cut(s) 132, 294
BstF5I GGATG 3 cut(s) 84, 229, 286
BstMWI GCNNNNNNNGC 2 cut(s) 40, 259
BstNSI RCATGY 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 3 cut(s) 84, 229, 286
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 160, 398
CviAII CATG 1 cut(s) 326
CviJI RGCY 3 cut(s) 24, 71, 250
CviKI_1 RGCY 3 cut(s) 24, 71, 250
CviQI GTAC 2 cut(s) 160, 398
DdeI CTNAG 2 cut(s) 30, 245
EcoNI CCTNNNNNAGG 2 cut(s) 132, 294
FaeI CATG 1 cut(s) 329
FaiI YATR 6 cut(s) 102, 177, 179, 327, 406, 412
FatI CATG 1 cut(s) 325
Fnu4HI GCNGC 3 cut(s) 22, 69, 251
FokI GGATG 3 cut(s) 71, 236, 293
Fsp4HI GCNGC 3 cut(s) 22, 69, 251
FspBI CTAG 1 cut(s) 62
GluI GCNGC 3 cut(s) 22, 69, 251
GsuI CTGGAG 2 cut(s) 277, 315
HaeIII GGCC 1 cut(s) 250
Hin1II CATG 1 cut(s) 329
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
Hpy166II GTNNAC 3 cut(s) 120, 213, 323
Hpy188I TCNGA 2 cut(s) 31, 303
Hpy188III TCNNGA 2 cut(s) 256, 334
Hpy8I GTNNAC 3 cut(s) 120, 213, 323
HpyCH4III ACNGT 2 cut(s) 124, 217
HpyCH4V TGCA 4 cut(s) 21, 43, 100, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 259
HpyF3I CTNAG 2 cut(s) 30, 245
Hsp92II CATG 1 cut(s) 329
LpnPI CCDG 8 cut(s) 29, 57, 241, 279, 303, 354, 363, 371
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 3 cut(s) 42, 43, 55
MaeI CTAG 1 cut(s) 62
MbiI CCGCTC 1 cut(s) 253
MfeI CAATTG 1 cut(s) 38
MluCI AATT 2 cut(s) 38, 348
MnlI CCTC 2 cut(s) 252, 290
MroXI GAANNNNTTC 3 cut(s) 13, 153, 327
MseI TTAA 2 cut(s) 141, 270
MslI CAYNNNNRTG 1 cut(s) 16
MunI CAATTG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 40, 259
NlaIII CATG 1 cut(s) 329
NspI RCATGY 1 cut(s) 329
OliI CACNNNNGTG 1 cut(s) 16
PciI ACATGT 1 cut(s) 325
PdmI GAANNNNTTC 3 cut(s) 13, 153, 327
PkrI GCNGC 3 cut(s) 23, 70, 252
PscI ACATGT 1 cut(s) 325
RsaI GTAC 2 cut(s) 161, 399
RsaNI GTAC 2 cut(s) 160, 398
RseI CAYNNNNRTG 1 cut(s) 16
SaqAI TTAA 2 cut(s) 141, 270
SatI GCNGC 3 cut(s) 22, 69, 251
SetI ASST 3 cut(s) 48, 139, 301
SfaNI GCATC 3 cut(s) 42, 43, 55
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 38, 348
SsiI CCGC 2 cut(s) 68, 251
SspMI CTAG 1 cut(s) 62
TaaI ACNGT 2 cut(s) 124, 217
TasI AATT 2 cut(s) 38, 348
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 71, 253
Tru1I TTAA 2 cut(s) 141, 270
Tru9I TTAA 2 cut(s) 141, 270
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 341, 399
TspGWI ACGGA 1 cut(s) 293
XagI CCTNNNNNAGG 2 cut(s) 132, 294
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 329
XmnI GAANNNNTTC 3 cut(s) 13, 153, 327
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.